PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0238804
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Project Name
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Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 | ||||||||||||||||||
NCBI BioProject Accession
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PRJNA441428 |
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NCBI Locus Tag
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C7728
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NCBI BioSample Accession
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SAMN08777777 |
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PI | Rafael Oliveira | ||||||||||||||||||
Added By |
JGI automated process
on 2017-09-15 |
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Last Modified By |
JGI automated process
on 2022-03-13 |
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Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil
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Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||
Specimen
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Biome |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Metagenome
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EXTERNAL PROJECT LINKS | |||||||||||||||||||
JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
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10.46936/10.25585/60000701 |
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JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
Genome Publications
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Sci Data
6(1):140
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||||
Study |
Plant-associated microbial communities from Velloziaceae species in rupestrian grasslands, the National Park of Serra do Cipo, Brazil |
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Biosample |
Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 |
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Analysis Projects |
Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Combined Assembly of Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil |
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Number of Analysis Projects (AP) |
3 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
Finishing Goal
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Level 1: Standard Draft |
Contamination Screening Input
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DNA Amplification Method
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Sorting Technology
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500-1TB |
Library Method
(MIGS-28)
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Illumina Low Input Fragment, 300bp, Tubes
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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SAMPLE NAME | |
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Sample Name |
Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 |
Other Names (alias, synonyms, short names) |
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Sample Description |
Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil
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SAMPLE TAXONOMY | |
NCBI Taxonomy ID |
939928 |
GOLD CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Plants
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Ecosystem Type |
Roots
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Ecosystem Subtype |
Rhizosphere
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Specific Ecosystem |
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