PROJECT INFORMATION
GOLD Project ID
Gp0225984  
Project Name
Methylosinus trichosporium OB3b transcriptome - OB3b-REP1-AMS-CH4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methylosinus trichosporium OB3b transcriptome - OB3b-REP1-AMS-CH4
NCBI BioProject ID 425692
NCBI BioProject Accession PRJNA425692
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08816033
PI LISA Y. STEIN
Added By JGI automated process on 2017-08-25
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methylosinus trichosporium OB3b transcriptome; Ammonia mineral salts media with methane  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Regulatory interplay between carbon and nitrogen metabolism of methanotrophic bacteria
Organism Methylosinus trichosporium OB3b
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001970
Organism Name
Methylosinus trichosporium OB3b  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Methylosinus  
Genus Synonyms
  
Species
Methylosinus trichosporium  
Subspecies
  
Species Synonyms
  
Strain
OB3b  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 35070  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1438  
Exemplar Name
Methylosinus trichosporium  
Taxon DOI
10.1601/tx.1438  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 595536
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Methylocystaceae  
NCBI Genus
Methylosinus  
NCBI Species
Methylosinus trichosporium  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M29024
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Metabolisms Methane oxidation
TCE degrader
Pollutant degrader
Phenotypes
  
Energy Sources Methanotroph

 

 

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