PROJECT INFORMATION
GOLD Project ID
Gp0225980  
Project Name
Methylomicrobium album BG8 transcriptome - BG8-REP3-AMS-CH4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methylomicrobium album BG8 transcriptome - BG8-REP3-AMS-CH4
NCBI BioProject ID 425688
NCBI BioProject Accession PRJNA425688
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08221615
PI LISA Y. STEIN
Added By JGI automated process on 2017-08-25
Last Modified By JGI automated process on 2020-04-05
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Methylomicrobium album BG8 transcriptome; Ammonia mineral salts media with methane  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Regulatory interplay between carbon and nitrogen metabolism of methanotrophic bacteria
Organism Methylomicrobium album BG8
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001969
Organism Name
Methylomicrobium album BG8  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Methylomicrobium  
Genus Synonyms
Methylobacter  
Species
Methylomicrobium album  
Subspecies
  
Species Synonyms
  
Strain
BG8  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 33003  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2414  
Exemplar Name
Methylomicrobium album  
Taxon DOI
10.1601/tx.2425  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 686340
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Methylococcales  
NCBI Family
Methylococcaceae  
NCBI Genus
Methylomicrobium  
NCBI Species
Methylomicrobium album  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID EU144025
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Soil
Metabolisms Hydrocarbon degrading
Methane oxidation
Phenotypes
  
Energy Sources Methanotroph

 

 

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