PROJECT INFORMATION
GOLD Project ID
Gp0225923  
Project Name
Polaromonas naphthalenivorans CJ 2 transcriptome - pyruvate +N rep 3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Polaromonas naphthalenivorans CJ 2 transcriptome - pyruvate +N rep 3
NCBI BioProject ID 425631
NCBI BioProject Accession PRJNA425631
NCBI Locus Tag
  
NCBI BioSample Accession SAMN08220694
PI Eugene Madsen
Added By JGI automated process on 2017-08-25
Last Modified By JGI automated process on 2019-04-29
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Polaromonas naphthalenivorans CJ 2 transcriptome; cells grown in pyruvate and NH4, replicate 3  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Groundwater microbial communities from coal-tar-waste-contaminated well in S. Glens Falls, New York, USA
Organism Polaromonas naphthalenivorans CJ2
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina RNASeq w/rRNA Depletion, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
1  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000229
Organism Name
Polaromonas naphthalenivorans CJ2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Polaromonas  
Genus Synonyms
  
Species
Polaromonas naphthalenivorans  
Subspecies
  
Species Synonyms
  
Strain
CJ2  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC BAA-779  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1824  
Exemplar Name
Polaromonas naphthalenivorans  
Taxon DOI
10.1601/tx.1824  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 365044
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Polaromonas  
NCBI Species
Polaromonas naphthalenivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 376940
Genbank 16S ID AY166684
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Sediment
Aquatic
Fresh water
Metabolisms PAH-degrading
Naphthalene-degrading
Phenotypes Non-Pathogen
Energy Sources Heterotroph

 

 

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