PROJECT INFORMATION
GOLD Project ID
Gp0220726  
Project Name
Soil microbial communities from Rifle, Colorado, USA - RBG_13  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Subsurface metagenome
NCBI BioProject ID 288027
NCBI BioProject Accession PRJNA288027
NCBI Locus Tag
  
NCBI BioSample Accession SAMN03842427
PI Jill Banfield
Added By JGI automated process on 2017-06-30
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Banfield Lab, University of California, Berkeley
Collaborating Institute
  
Funding Agency
  
Project Description
Soil microbial communities from background sediment sample, well D04, Rifle, Colorado, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nature communications Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1085346  (Link to NCBI )
Experiment Title Rifle background sediment; well D04 at 13ft depth
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name SRA_RBG_13
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 300
PROJECT COMPOSITION
Study Soil microbial communities from Rifle, Colorado, USA
Biosample Soil microbial communities from Rifle, Colorado, USA - RBG_13
Analysis Projects Soil microbial communities from Rifle, Colorado, USA - RBG_13
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from Rifle, Colorado, USA - RBG_13
Other Names (alias, synonyms, short names)
  
Sample Description
Background sediment sample from well D04, Rifle, Colorado  
SAMPLE TAXONOMY
NCBI Taxonomy ID 749907
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Geologic  
Ecosystem Subtype
Sediment  
Specific Ecosystem
  

 

 

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