Studies
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56,336 |
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Biosamples
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196,965 |
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Sequencing Projects
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525,338 |
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Analysis Projects
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385,100 |
| Organisms | 484,220 |
| PROJECT INFORMATION | |||||||||||||||||||||||||||||||||||||
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GOLD Project ID
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Gp0220348
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Project Name
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Photorhabdus temperata DSM 19724
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Photorhabdus temperata DSM 19724 | ||||||||||||||||||||||||||||||||||||
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NCBI BioProject Accession
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PRJNA500542 |
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NCBI Locus Tag
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EDD24
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NCBI BioSample Accession
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SAMN10363397 |
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Source Sample ID
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| PI | Markus Göker | ||||||||||||||||||||||||||||||||||||
| Added By | JGI automated process on 2017-06-29 | ||||||||||||||||||||||||||||||||||||
| Last Modified By | JGI automated process on 2023-05-21 | ||||||||||||||||||||||||||||||||||||
| Project Comments |
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Project Status
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targeted
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Sequencing as part of the Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II project
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||||||||||||||||||||
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JGI Data Utilization Status
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Restricted
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JGI Award DOI
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10.46936/10.25585/60001024 |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||||||||||||||||||
| Study |
Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera |
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| Organism |
Photorhabdus temperata cinerea DSM 19724 |
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| Analysis Projects |
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| Number of Analysis Projects (AP) |
0 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
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Sequencing Status
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Awaiting Sample |
| Sequencing Quality (MIGS-31) |
Level 3: Improved-High-Quality Draft |
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Finishing Goal
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Level 3: Improved-High-Quality Draft |
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio Sequel IIe |
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Library Method
(MIGS-28)
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PacBio Multiplexed 10kb, Tubes
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0032734 |
| Organism Name |
Photorhabdus temperata cinerea DSM 19724
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-GAMMA
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| Genus |
Photorhabdus
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| Genus Synonyms |
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| Species |
Photorhabdus temperata
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| Subspecies |
cinerea
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| Species Synonyms |
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| Strain |
DSM 19724
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 19724
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.13808
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| Exemplar Name |
Photorhabdus cinerea
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| Taxon DOI |
10.1601/tx.31989
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
574560 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Pseudomonadota
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| NCBI Class |
Gammaproteobacteria
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| NCBI Order |
Enterobacterales
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| NCBI Family |
Morganellaceae
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| NCBI Genus |
Photorhabdus
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| NCBI Species |
Photorhabdus temperata
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
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| Ecosystem Category |
Invertebrates
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| Ecosystem Type |
Nematoda
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| Ecosystem Subtype |
Digestive system
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| Specific Ecosystem |
Intestine
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Host |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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