PROJECT INFORMATION
GOLD Project ID
Gp0220347  
Project Name
Photorhabdus temperata DSM 22387  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Photorhabdus temperata DSM 22387
NCBI BioProject Accession PRJNA500541
NCBI Locus Tag
EDD23  
NCBI BioSample Accession SAMN10363314
PI Markus Göker
Added By JGI automated process on 2017-06-29
Last Modified By JGI automated process on 2022-08-14
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing as part of the Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60001024
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX5084371  (Link to NCBI )
Experiment Title Photorhabdus temperata DSM 22387
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name COGZC
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX5084370  (Link to NCBI )
Experiment Title Photorhabdus temperata DSM 22387
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name COGZC
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Photorhabdus temperata tasmaniensis DSM 22387
Analysis Projects Photorhabdus temperata DSM 22387
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0032737
Organism Name
Photorhabdus temperata tasmaniensis DSM 22387  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Photorhabdus  
Genus Synonyms
  
Species
Photorhabdus temperata   
Subspecies
tasmaniensis  
Species Synonyms
  
Strain
DSM 22387  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 22387  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.20010  
Exemplar Name
Photorhabdus tasmaniensis  
Taxon DOI
10.1601/tx.31996  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 574560
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Morganellaceae  
NCBI Genus
Photorhabdus  
NCBI Species
Photorhabdus temperata  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Invertebrates  
Ecosystem Type
Nematoda  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?