PROJECT INFORMATION
GOLD Project ID
Gp0220146  
Project Name
Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16048  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16048
NCBI BioProject ID 442908
NCBI BioProject Accession PRJNA442908
NCBI Locus Tag
C8F73  
NCBI BioSample Accession SAMN08777677
PI Maureen Coleman
Added By JGI automated process on 2017-06-28
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sorted cells from Lake Michigan water  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome - Single Particle Sort  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3987231  (Link to NCBI )
Experiment Title Synechococcus bacterium JGI_UCMI16048
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection other
Library Name BXCWH
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Freshwater picocyanobacteria communities from the Laurentian Great Lakes, United States
Biosample Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16048
Analysis Projects Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16048
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina NextSeq-HO
Library Method (MIGS-28)
Illumina Nextera with Size Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Sorted cell/s from freshwater from Lake Michigan, Michigan, United States - Synechococcus bacterium JGI_UCMI16048
Other Names (alias, synonyms, short names)
  
Sample Description
Sorted cells from Lake Michigan water  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1647806
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lake  
Specific Ecosystem
  

 

 

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