PROJECT INFORMATION
GOLD Project ID
Gp0217480  
Project Name
Metatranscriptome of Oidiodendron maius strain Zn mycelium 45 days culture from Turin, Italy - OmVmFLMB3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Oidiodendron maius strain Zn mycelium 45 days culture from Turin, Italy - OmVmFLMB3
NCBI BioProject ID 404111
NCBI BioProject Accession PRJNA404111
NCBI Locus Tag
CMV93  
NCBI BioSample Accession SAMN07630284
PI Francis M. Martin
Added By JGI automated process on 2017-06-08
Last Modified By JGI automated process on 2021-01-18
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Oidiodendron maius mycelium 45 days culture from Turin, Italy  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3324811  (Link to NCBI )
Experiment Title Oidiodendron maius strain Zn Vaccinium myrtillus Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name TSHP
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Oidiodendron maius strain Zn mycelium 45 days culture from Turin, Italy - OmVmFLMB3
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Oidiodendron maius strain Zn mycelium 45 days culture from Turin, Italy - OmVmFLMB3
Other Names (alias, synonyms, short names)
  
Sample Description
Oidiodendron maius mycelium 45 days culture from Turin, Italy  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fungi  
Ecosystem Type
Mycelium  
Ecosystem Subtype
  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
O. maius mycelium was grown in vitro in Petri plates on the agarized medium B at 22°C for 45 days  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?