Studies
|
56,334 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0216139
|
|
Project Name
|
Pelagibacter bacterium JGI 01_K16_4000m
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Pelagibacter bacterium JGI 01_K16_4000m |
|
NCBI BioProject Accession
|
PRJNA586041 |
|
NCBI Locus Tag
|
GG042
|
|
NCBI BioSample Accession
|
SAMN15149931 |
|
Source Sample ID
|
|
| PI | Edward DeLong |
| Added By | JGI automated process on 2017-05-22 |
| Last Modified By | JGI automated process on 2023-02-26 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
|
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
|
|
Project Description
|
Single cell genome sequencing from the North Pacfic Subtropical Gyre, Station ALOHA
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
Unrestricted
|
|
JGI Award DOI
|
10.46936/10.25585/60000920 |
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Comprehensive metagenome and single cell genome sequencing from the open ocean community of North Pacfic Subtropical Gyre, Station ALOHA |
| Organism |
Pelagibacter bacterium JGI 01_K16_4000m |
| Analysis Projects |
Pelagibacter bacterium JGI 01_K16_4000m (contamination screened) |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sorting Technology
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina NextSeq-HO |
|
Library Method
(MIGS-28)
|
Illumina Nextera with Size Selection, Plates
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0370377 |
| Organism Name |
Pelagibacter bacterium JGI 01_K16_4000m
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
|
| Genus Synonyms |
|
| Species |
Pelagibacter bacterium JGI 01_K16_4000m
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
JGI 01_K16_4000m
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
No
|
| Culture Type |
|
| Organism Type |
Natural
|
| Uncultured Type |
Single Cell
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2738651 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Candidatus Pelagibacterales
|
| NCBI Family |
Pelagibacteraceae
|
| NCBI Genus |
Candidatus Pelagibacter
|
| NCBI Species |
Candidatus Pelagibacter bacterium JGI 01_K16_4000m
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Oceanic
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
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| Salinity |
|
| pH |
|
| Cell Diameter |
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| Cell Length |
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| Color |
|
| Gram Staining |
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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