PROJECT INFORMATION
GOLD Project ID
Gp0214097  
Project Name
Metatranscriptome of arctic peat soil microbial communities from Svalbard, Norway - K1_a  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Peat Soil Metatranscriptome
NCBI BioProject Accession PRJNA170725
NCBI Locus Tag
  
NCBI BioSample Accession SAMN01090426
Source Sample ID
PI Unknown
Added By JGI automated process on 2017-05-08
Last Modified By Supratim Mukherjee on 2017-05-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center University of Tromso
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of arctic peat soil microbial communities from Svalbard, Norway to study soil organic carbon transformations and identify the active microorganisms driving these processes  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications mBio: Members of the Genus Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland.
PubMed: 30401770 DOI: e00815-18
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX648310  (Link to NCBI )
Experiment Title Ka, Illumina HighSeq2000 metatranscriptome
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Ka
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX648314  (Link to NCBI )
Experiment Title Km, mRNA enriched from Ka_RNA_illumina - Illumina HighSeq2000 metatranscriptome
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name Km
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
 
SRA Experiment Id SRX160804  (Link to NCBI )
Experiment Title Metatranscriptome from top layer of arctic peat soil
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name K1a_RNA
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
 
SRA Experiment Id SRX160808  (Link to NCBI )
Experiment Title Metagenome from top layer of arctic peat soil
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name K1a_DNA
Library Layout SINGLE
Library Instrument 454 GS FLX Titanium
Spot Length 0
PROJECT COMPOSITION
Study Metatranscriptome of arctic peat soil microbial communities from Svalbard, Norway
Biosample Arctic peat soil microbial communities from Svalbard, Norway - K1_a
Analysis Projects Metatranscriptome of arctic peat soil microbial communities from Svalbard, Norway - K1_a
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Arctic peat soil microbial communities from Svalbard, Norway - K1_a
Other Names (alias, synonyms, short names)
  
Sample Description
Arctic peat soil microbial communities from Svalbard, Norway. Soil pH: 5.8 and water content: 0.91  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Peat  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
  

 

 

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