PROJECT INFORMATION
GOLD Project ID
Gp0209037  
Project Name
Endozoicomonas sp. SP-A_K07  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metagenomes and single cells from the corals Acropora humilis, Pocillopora verrucosa and Stylophora pistillata, raw sequence reads
NCBI BioProject Accession PRJNA323666
NCBI Locus Tag
  
NCBI BioSample Accession
Source Sample ID
PI Lars Schreiber
Added By Lars Schreiber on 2017-03-24
Last Modified By Supratim Mukherjee on 2017-04-11
Project Comments
Raw reads available at SRA under the run accession number: SRR5226590  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Bigelow Laboratory Single Cell Genomics Center (SCGC) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Single cells from the coral Stylophora pistillata, raw sequence reads. These reads were used for a composite single cell assembly to reconstruct the genome of a symbiotic bacterium.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications Scientific reports: Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts.
PubMed: 28094347 DOI: 10.1038/srep40579
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Endozoicomonas sp. SP-A genome assembly
Organism Endozoicomonas sp. SP-A_K07
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0368011
Organism Name
Endozoicomonas sp. SP-A_K07  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
  
Genus Synonyms
  
Species
  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 305899
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
Oceanospirillales  
NCBI Family
Endozoicomonadaceae  
NCBI Genus
Endozoicomonas  
NCBI Species
  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Invertebrates  
Ecosystem Type
Cnidaria  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Coral
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?