PROJECT INFORMATION
GOLD Project ID
Gp0208117  
Project Name
Caldicellulosiruptor bescii RKCB133  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Caldicellulosiruptor bescii RKCB133
NCBI BioProject ID 402427
NCBI BioProject Accession PRJNA402427
NCBI Locus Tag
CLV05  
NCBI BioSample Accession SAMN07621764
PI Robert Kelly
Added By JGI automated process on 2017-03-07
Last Modified By JGI automated process on 2020-08-22
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing of a genetically modified strain of Caldicellulosiruptor bescii JWCB005 with modifications to the glucan degradation locus  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3362819  (Link to NCBI )
Experiment Title Caldicellulosiruptor bescii RKCB133
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BTGXY
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX3362820  (Link to NCBI )
Experiment Title Caldicellulosiruptor bescii RKCB133
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BTGXY
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
PROJECT COMPOSITION
Study Sequencing of Caldicellulosiruptor bescii JWCB005 knockout strains with modifications to the glucan degradation locus
Organism Caldicellulosiruptor bescii RKCB133
Analysis Projects Caldicellulosiruptor bescii RKCB133
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS II
Library Method (MIGS-28)
PacBio 6-10kb w/ Blue Pippin Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
35  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0367811
Organism Name
Caldicellulosiruptor bescii RKCB133  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Caldicellulosiruptor  
Genus Synonyms
  
Species
Caldicellulosiruptor bescii  
Subspecies
  
Species Synonyms
  
Strain
RKCB133  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Genetically modified  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 31899
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Thermoanaerobacterales  
NCBI Family
Thermoanaerobacterales Family III. Incertae Sedis  
NCBI Genus
Caldicellulosiruptor  
NCBI Species
Caldicellulosiruptor bescii  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Laboratory developed  
Ecosystem Type
Genetically modified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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