PROJECT INFORMATION | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
GOLD Project ID
![]() |
Gp0207256
|
||||||||||||||||||
Project Name
![]() |
Echinodontium tinctorium Aho-80 Transcriptome - Aho-80 RNA MEA
|
||||||||||||||||||
Other Names
![]() |
|
||||||||||||||||||
Legacy GOLD ID
![]() |
|
||||||||||||||||||
NCBI BioProject Name | Echinodontium tinctorium Aho-80 Transcriptome - Aho-80 RNA MEA | ||||||||||||||||||
NCBI BioProject ID
![]() |
519673 |
||||||||||||||||||
NCBI BioProject Accession
![]() |
PRJNA519673 |
||||||||||||||||||
NCBI Locus Tag
![]() |
|
||||||||||||||||||
NCBI BioSample Accession
![]() |
SAMN10866058 |
||||||||||||||||||
PI | Joseph Spatafora | ||||||||||||||||||
Added By |
JGI automated process
on 2017-03-07 |
||||||||||||||||||
Last Modified By |
JGI automated process
on 2020-06-14 |
||||||||||||||||||
Project Comments |
|
||||||||||||||||||
Project Status
![]() |
incomplete
|
||||||||||||||||||
Project Relevance
![]() |
|
||||||||||||||||||
Sequencing Center
![]() |
DOE Joint Genome Institute (JGI)
(USA)
|
||||||||||||||||||
Collaborating Institute
![]() |
|
||||||||||||||||||
Funding Agency
![]() |
U.S. Department of Energy (DOE)
(USA)
|
||||||||||||||||||
Project Description
![]() |
Transcriptome of Echinodontium tinctorium Aho-80 grown in 1.5% liquid MEA at 25C
|
||||||||||||||||||
Is JGI Project |
Yes
|
||||||||||||||||||
Project Information Visibility
![]() |
Public | ||||||||||||||||||
PROJECT TYPE | |||||||||||||||||||
Specimen
![]() |
Organism |
||||||||||||||||||
Nucleic Acid
![]() |
RNA |
||||||||||||||||||
Sequencing Strategy
![]() |
Transcriptome
|
||||||||||||||||||
EXTERNAL PROJECT LINKS | |||||||||||||||||||
JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
Project Information
![]() |
|
||||||||||||||||||
Database
![]() |
|
||||||||||||||||||
Genome Publications
![]() |
|
||||||||||||||||||
Other Publications
![]() |
|
||||||||||||||||||
SRA Experiment |
|
||||||||||||||||||
PROJECT COMPOSITION | |||||||||||||||||||
Study |
1000 Fungal Genomes |
||||||||||||||||||
Organism |
Echinodontium tinctorium Aho-80 |
||||||||||||||||||
Analysis Projects |
|
||||||||||||||||||
Number of Analysis Projects (AP) |
0
|
||||||||||||||||||
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
---|---|
Sequencing Status
![]() |
Complete |
Sequencing Quality (MIGS-31) |
|
Finishing Goal
![]() |
|
Contamination Screening Input
![]() |
|
DNA Amplification Method
![]() |
|
Sequencing Comments
![]() |
|
DNA Amplification Kit
![]() |
|
Sequencing Technology
(MIGS-29)
![]() |
Illumina NovaSeq Illumina HiSeq 2500-1TB Illumina HiSeq 2500 |
Library Method
(MIGS-28)
![]() |
Illumina RNASeq w/PolyA Selection, Tubes
|
Library Layout
![]() |
|
Library Screening Method
![]() |
|
Number Of Reads
![]() |
|
Read Size
![]() |
|
Vector
![]() |
|
GC Percent |
|
Chromosome Count |
|
Plasmid Count |
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0033208 |
Organism Name |
Echinodontium tinctorium Aho-80
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
EUKARYAL
|
Phylogeny |
FUNGI-BASIDIOMYCOTA
|
Genus |
Echinodontium
|
Genus Synonyms |
|
Species |
Echinodontium tinctorium
|
Subspecies |
|
Species Synonyms |
|
Strain |
Aho-80
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
|
Type Strain |
Unknown
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
![]() |
|
NCBI Taxonomy ID |
40440 |
NCBI Superkingdom |
Eukaryota
|
NCBI Kingdom |
Fungi
|
NCBI Phylum |
Basidiomycota
|
NCBI Class |
Agaricomycetes
|
NCBI Order |
Russulales
|
NCBI Family |
Echinodontiaceae
|
NCBI Genus |
Echinodontium
|
NCBI Species |
Echinodontium tinctorium
|
ISOLATION CLASSIFICATION | |
Ecosystem |
|
Ecosystem Category |
|
Ecosystem Type |
|
Ecosystem Subtype |
|
Specific Ecosystem |
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
|
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
|
Cell Shape |
|
Motility |
|
Sporulation |
|
Temperature Range |
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
|
Biotic Relationships |
|
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
|
Known Habitats |
|
Metabolisms |
|
Phenotypes |
|
Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?