PROJECT INFORMATION
GOLD Project ID
Gp0206754  
Project Name
Metatranscriptome of Laccaria bicolor mycelium, 14 days culture from Champenoux, France - SJL2-2w  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Laccaria bicolor mycelium, 14 days culture from Champenoux, France - SJL2-2w
NCBI BioProject ID 443970
NCBI BioProject Accession PRJNA443970
NCBI Locus Tag
C8Q17  
NCBI BioSample Accession SAMN08777247
PI Francis M. Martin
Added By JGI automated process on 2017-02-27
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Laccaria bicolor mycelium, 14 days on P20MES treated with Jasmonic acid (50uM) and Salicylic acid (500uM)  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX4810925  (Link to NCBI )
Experiment Title Laccaria bicolor - Populus tremula x P. alba 717-1B4 Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name BPWCS
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Laccaria bicolor mycelium, 14 days culture from Champenoux, France - SJL2-2w
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates; Illumina Low Input RNASeq w/PolyA Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Laccaria bicolor mycelium, 14 days culture from Champenoux, France - SJL2-2w
Other Names (alias, synonyms, short names)
  
Sample Description
Metatranscriptome of Laccaria bicolor mycelium, 14 days on P20MES treated with Jasmonic acid (50uM) and Salicylic acid (500uM)  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fungi  
Ecosystem Type
Mycelium  
Ecosystem Subtype
  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
14 days on P20MES treated with Jasmonic acid (50uM) and Salicylic acid (500uM)  

 

 

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