PROJECT INFORMATION
GOLD Project ID
Gp0206734  
Project Name
Metatranscriptome of Populus tremula x Populus alba 717-1B4 root, 7 days culture from Champenoux, France - G3-1w  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Populus tremula x Populus alba 717-1B4 root, 7 days culture from Champenoux, France - G3-1w
NCBI BioProject Accession PRJNA443950
NCBI Locus Tag
C8P97  
NCBI BioSample Accession SAMN08778823
Source Sample ID
PI Francis M. Martin
Added By JGI automated process on 2017-02-27
Last Modified By JGI automated process on 2022-12-26
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metatranscriptome of Populus root microbial communities, 7 days on P20MES treated with Gibberellic acid (1uM)  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001022
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX4810891  (Link to NCBI )
Experiment Title Laccaria bicolor - Populus tremula x P. alba 717-1B4 Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection other
Library Name BPUYO
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Populus tremula x Populus alba 717-1B4 root, 7 days culture from Champenoux, France - G3-1w
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Low Input RNASeq w/PolyA Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Populus tremula x Populus alba 717-1B4 root, 7 days culture from Champenoux, France - G3-1w
Other Names (alias, synonyms, short names)
  
Sample Description
Metatranscriptome of Populus root microbial communities, 7 days on P20MES treated with Gibberellic acid (1uM)  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1118232
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
7 days on P20MES treated with Gibberellic acid (1uM)  

 

 

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