PROJECT INFORMATION
GOLD Project ID
Gp0206231  
Project Name
Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
NCBI BioProject Accession PRJNA465334
NCBI Locus Tag
DGB88  
NCBI BioSample Accession SAMN09091910
Source Sample ID
PI Vincent Denef
Added By JGI automated process on 2017-02-17
Last Modified By JGI automated process on 2021-11-07
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Freshwater viral communities from Lake Michigan, USA  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000744
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX8048355  (Link to NCBI )
Experiment Title Fa13.VD.MM15.D.N
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection other
Library Name BCUUP
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Freshwater lake microbial communities from the Great Lakes, USA, analyzing microbial food webs and carbon cycling
Biosample Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Analysis Projects Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Production RnD, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Other Names (alias, synonyms, short names)
  
Sample Description
Freshwater viral communities from Lake Michigan, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 449393
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lake  
Specific Ecosystem
  

 

 

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