PROJECT INFORMATION
GOLD Project ID
Gp0205743  
Project Name
Vibrio carchariae ATCC 35084  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome sequencing as part of FDA-ARGOS: dAtabase for Regulatory Grade micrObial Sequences project
NCBI BioProject ID 231221
NCBI BioProject Accession PRJNA231221
NCBI Locus Tag
AL469  
NCBI BioSample Accession SAMN03996255
PI
Added By JGI automated process on 2017-02-17
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Institute for Genome Sciences, University of Maryland School of Medicine (USA)
US Food and Drug Administration
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing as part of FDA-ARGOS: dAtabase for Regulatory Grade micrObial Sequences project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1384001  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PL100045830-1
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1384002  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PL100045830-1
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1384003  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IL100045946
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
Spot Length 202
PROJECT COMPOSITION
Study Genome sequencing as part of FDA-ARGOS: dAtabase for Regulatory Grade micrObial Sequences project
Organism Vibrio carchariae ATCC 35084
Analysis Projects Vibrio carchariae ATCC 35084
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0029672
Organism Name
Vibrio carchariae ATCC 35084  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
  
Species
Vibrio carchariae  
Subspecies
  
Species Synonyms
  
Strain
ATCC 35084  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 35084  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2957  
Exemplar Name
Vibrio carchariae  
Taxon DOI
10.1601/tx.2957  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 669
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio harveyi  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Excretory system  
Ecosystem Subtype
Kidneys  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?