PROJECT INFORMATION
GOLD Project ID
Gp0203620  
Project Name
Caldithrix abyssi LF13, DSM 13497  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Caldithrix abyssi DSM 13497 LF13
NCBI BioProject Accession PRJNA350778
NCBI Locus Tag
Cabys  
NCBI BioSample Accession SAMN05946030
Source Sample ID
PI Unknown
Added By JGI automated process on 2017-02-17
Last Modified By
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center Winogradsky Institute of Microbiology (Russia)
Collaborating Institute
  
Funding Agency
  
Project Description
Caldithrix abyssi DSM 13497 LF13 Genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Caldithrix abyssi DSM 13497 LF13 Genome sequencing
Organism Caldithrix abyssi LF13, DSM 13497
Analysis Projects Caldithrix abyssi LF13, DSM 13497
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003487
Organism Name
Caldithrix abyssi LF13, DSM 13497  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CALDITRICHOTA  
Genus
Caldithrix  
Genus Synonyms
  
Species
Caldithrix abyssi  
Subspecies
  
Species Synonyms
  
Strain
LF13, DSM 13497  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 13497  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.623  
Exemplar Name
Caldithrix abyssi  
Taxon DOI
10.1601/tx.623  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 880073
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Calditrichota  
NCBI Class
Calditrichia  
NCBI Order
Calditrichales  
NCBI Family
Calditrichaceae  
NCBI Genus
Caldithrix  
NCBI Species
Caldithrix abyssi  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AJ430587
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Thermophile  
Salinity
  
pH
6.8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Aquatic
Deep sea
Metabolisms
  
Phenotypes
  
Energy Sources Mixotroph

 

 

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