PROJECT INFORMATION
GOLD Project ID
Gp0198137  
Project Name
Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG
NCBI BioProject ID 404449
NCBI BioProject Accession PRJNA404449
NCBI Locus Tag
CMZ32  
NCBI BioSample Accession SAMN07630784
PI Mark Dopson
Added By JGI automated process on 2017-02-05
Last Modified By JGI automated process on 2019-11-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing a sample of deep subsurface groundwater to explore deep biosphere microbial communities  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3602285  (Link to NCBI )
Experiment Title MM_PW_MetaG
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BPOUS
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Groundwater microbial communities from three deep subsurface sites in Europe
Biosample Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG
Analysis Projects Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Tubes; Illumina Low Input Fragment, 300bp, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG
Other Names (alias, synonyms, short names)
  
Sample Description
Sequencing a sample of deep subsurface groundwater to explore deep biosphere microbial communities  
SAMPLE TAXONOMY
NCBI Taxonomy ID 717931
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
  

 

 

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