PROJECT INFORMATION | |
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GOLD Project ID
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Gp0195587
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Project Name
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Phycisphaerae bacterium ST-NAGAB-D1
|
Other Names
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unclassified Phycisphaerae ST-NAGAB-D4
|
Legacy GOLD ID
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|
NCBI BioProject Name | Genome sequencing and assembly of Anaerohalosphaera lusitana strain:ST-NAGAB-D1 |
NCBI BioProject ID
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369385 |
NCBI BioProject Accession
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PRJNA369385 |
NCBI Locus Tag
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|
NCBI BioSample Accession
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SAMN06284947 |
PI | Stefan Spring |
Added By |
Stefan Spring
on 2017-01-24 |
Last Modified By |
Mahathi Kandimalla
on 2020-06-02 |
Project Comments |
|
Project Status
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Permanent Draft
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Project Relevance
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|
Sequencing Center
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Leibniz Institute
(Germany)
|
Collaborating Institute
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Funding Agency
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|
Project Description
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A novel lineage of the Phycisphaerae class from hypersaline sediments and mats
|
Is JGI Project |
No
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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Database
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Genome Publications
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International Journal of Systematic and Evolutionary Microbiology
70(2):1321-1330
.
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Other Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Diversity of culturable anaerobic prokaryotes in hypersaline microbial mats and sediments |
Organism |
Phycisphaerae bacterium ST-NAGAB-D1 |
Analysis Projects |
Phycisphaerae bacterium ST-NAGAB-D1 |
Number of Analysis Projects (AP) |
1
|
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio RS |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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|
GC Percent |
52
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0358204 |
Organism Name |
Phycisphaerae bacterium ST-NAGAB-D1
|
Other names (alias, synonyms, short names, common names) |
unclassified Phycisphaerae ST-NAGAB-D4
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PLANCTOMYCETES
|
Genus |
|
Genus Synonyms |
|
Species |
Phycisphaerae bacterium ST-NAGAB-D1
|
Subspecies |
|
Species Synonyms |
|
Strain |
ST-NAGAB-D1
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
DSM 103484
|
Type Strain |
Yes
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
1936003 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Planctomycetes
|
NCBI Class |
Phycisphaerae
|
NCBI Order |
Sedimentisphaerales
|
NCBI Family |
Anaerohalosphaeraceae
|
NCBI Genus |
Anaerohalosphaera
|
NCBI Species |
Anaerohalosphaera lusitana
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Aquatic
|
Ecosystem Type |
Sediment
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
KY471010 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
|
Cell Shape |
Coccoid
|
Motility |
Nonmotile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Salinity |
Halophile
|
pH |
6.6
|
Cell Diameter |
0.5 to 1.3 µm
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
|
Known Habitats |
|
Metabolisms |
Sugars fermentor |
Phenotypes |
Fastidious |
Energy Sources |
Chemoheterotroph |
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