PROJECT INFORMATION
GOLD Project ID
Gp0194194  
Project Name
Venenivibrio stagnispumantis DSM 18763  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Venenivibrio stagnispumantis DSM 18763
NCBI BioProject Accession PRJNA363521
NCBI Locus Tag
BXY30  
NCBI BioSample Accession SAMN06264868
Source Sample ID
PI Markus Göker
Added By JGI automated process on 2017-01-12
Last Modified By JGI automated process on 2022-09-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing as part of the Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60001024
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX3054959  (Link to NCBI )
Experiment Title Venenivibrio stagnispumantis DSM 18763
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BOWCG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX3054958  (Link to NCBI )
Experiment Title Venenivibrio stagnispumantis DSM 18763
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BOWCG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Venenivibrio stagnispumantis DSM 18763
Analysis Projects Venenivibrio stagnispumantis DSM 18763
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0030624
Organism Name
Venenivibrio stagnispumantis DSM 18763  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICOTA  
Genus
Venenivibrio  
Genus Synonyms
  
Species
Venenivibrio stagnispumantis  
Subspecies
  
Species Synonyms
  
Strain
DSM 18763  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 18763  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.13799  
Exemplar Name
Venenivibrio stagnispumantis  
Taxon DOI
10.1601/tx.13799  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 407998
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Aquificota  
NCBI Class
Aquificae  
NCBI Order
Aquificales  
NCBI Family
Hydrogenothermaceae  
NCBI Genus
Venenivibrio  
NCBI Species
Venenivibrio stagnispumantis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID DQ989208
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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