PROJECT INFORMATION
GOLD Project ID
Gp0194188  
Project Name
Desulfurobacterium pacificum DSM 15522  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Desulfurobacterium pacificum DSM 15522
NCBI BioProject ID 363515
NCBI BioProject Accession PRJNA363515
NCBI Locus Tag
BXY24  
NCBI BioSample Accession SAMN06265339
PI Markus G��ker
Added By JGI automated process on 2017-01-12
Last Modified By JGI automated process on 2019-09-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing as part of the Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3054670  (Link to NCBI )
Experiment Title Desulfurobacterium pacificum DSM 15522
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BOUZY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX3054671  (Link to NCBI )
Experiment Title Desulfurobacterium pacificum DSM 15522
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BOUZY
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Desulfurobacterium pacificum DSM 15522
Analysis Projects Desulfurobacterium pacificum DSM 15522
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0014044
Organism Name
Desulfurobacterium pacificum DSM 15522  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
AQUIFICAE  
Genus
Desulfurobacterium  
Genus Synonyms
  
Species
Desulfurobacterium pacificum  
Subspecies
  
Species Synonyms
  
Strain
DSM 15522  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 15522  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10701  
Exemplar Name
Desulfurobacterium pacificum  
Taxon DOI
10.1601/tx.10701  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 240166
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Aquificae  
NCBI Class
Aquificae  
NCBI Order
Desulfurobacteriales  
NCBI Family
Desulfurobacteriaceae  
NCBI Genus
Desulfurobacterium  
NCBI Species
Desulfurobacterium pacificum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 689673
Genbank 16S ID AY268936
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Salinity
  
pH
5.5-7.5  
Cell Diameter
0.4-0.5 um  
Cell Length
1.0-2.0 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases
  
Known Habitats Marine
Aquatic
Deep sea
Metabolisms Thiosulfate reducer
Sulfur reducer
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

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