PROJECT INFORMATION
GOLD Project ID
Gp0191785  
Project Name
Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
NCBI BioProject Accession PRJNA368383
NCBI Locus Tag
BZA88  
NCBI BioSample Accession SAMN06269071
PI Nina Dombrowski
Added By JGI automated process on 2016-12-20
Last Modified By JGI automated process on 2022-03-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The sample was collected from the center of the orange Beggiatoa Mat (M14 mat) at a depth of 0-3 cm, 2000m below sea level  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60000737
JGI Portal Download Raw Sequence Data
Genome Publications Nature communications 9(1):4999 Expansive microbial metabolic versatility and biodiversity in dynamic Guaymas Basin hydrothermal sediments.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX3568615  (Link to NCBI )
Experiment Title Guaymas Basin Sediment Guay1
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection other
Library Name BPYGA
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico
Biosample Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
Analysis Projects Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay1, Core 4569-9, 0-3 cm
Other Names (alias, synonyms, short names)
  
Sample Description
The sample was collected from the center of the orange Beggiatoa Mat (M14 mat) at a depth of 0-3 cm, 2000m below sea level  
SAMPLE TAXONOMY
NCBI Taxonomy ID 749907
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Sediment  

 

 

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