PROJECT INFORMATION
GOLD Project ID
Gp0191543  
Project Name
Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a
NCBI BioProject Accession PRJNA363642
NCBI Locus Tag
BXZ51  
NCBI BioSample Accession SAMN06265384
PI Ludmila Chistoserdova
Added By JGI automated process on 2016-12-14
Last Modified By JGI automated process on 2021-11-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Bacterial community was grown with methane serving as a single source of carbon under high oxygen condition  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX3015711  (Link to NCBI )
Experiment Title MT methane_oxidizing 14strains_24hour-a
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name BHXWZ
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Synthetic bacterial communities of pure cultures isolated from sediment of Lake Washington, USA
Biosample Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a
Analysis Projects Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a (Metagenome Metatranscriptome)
Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a (Metagenome Metatranscriptome Expression - Self)
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Synthetic bacterial communities of pure cultures from sediment of Lake Washington, USA, under high oxygen condition - MT methane_oxidizing 14strains_24hour-a
Other Names (alias, synonyms, short names)
  
Sample Description
Bacterial community was grown with methane serving as a single source of carbon under high oxygen condition  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1235509
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Modeled  
Ecosystem Type
Simulated communities (microbial mixture)  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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