Studies
|
52,459 |
|
Biosamples
|
170,240 |
|
Sequencing Projects
|
472,597 |
|
Analysis Projects
|
359,686 |
| Organisms | 460,462 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0190583
|
|
Project Name
|
Tsuneonella dongtanensis KCTC 22672
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Tsuneonella Genome sequencing |
|
NCBI BioProject Accession
|
PRJNA319016 |
|
NCBI Locus Tag
|
A6F68
|
|
NCBI BioSample Accession
|
SAMN04870882 |
| PI | |
| Added By |
JGI automated process
on 2016-12-10 |
| Last Modified By |
Mahathi Kandimalla
on 2021-03-01 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Environmental |
|
Sequencing Center
|
Second Institute of Oceanography, State Oceanic Administration
|
|
Collaborating Institute
|
|
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Funding Agency
|
|
|
Project Description
|
Tsuneonella genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
|
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Other Publications
|
Genome announcements
Draft Genome Sequence of Altererythrobacter troitsensis JCM 17037, Isolated from the Sea Urchin Strongylocentrotus intermedius.
Mar Genomics Complete genome sequence of a benzo[a]pyrene-degrading bacterium Altererythrobacter epoxidivorans CGMCC 1.7731(T). Show more publications... |
|
Ignored Publications
|
|
|
Unassigned Publications
|
International Journal of Systematic and Evolutionary Microbiology
61(Pt 4):709-15
Altererythrobacter namhicola sp. nov. and Altererythrobacter aestuarii sp. nov., isolated from seawater.
International Journal of Systematic and Evolutionary Microbiology 61(Pt 9):2035-9 Altererythrobacter dongtanensis sp. nov., isolated from a tidal flat. Show more publications...
International Journal of Systematic and Evolutionary Microbiology
61(Pt 12):2956-61
Altererythrobacter ishigakiensis sp. nov., an astaxanthin-producing bacterium isolated from a marine sediment.
International Journal of Systematic and Evolutionary Microbiology 60(Pt 2):307-11 Altererythrobacter marensis sp. nov., isolated from seawater. International Journal of Systematic and Evolutionary Microbiology 62(Pt 1):28-32 Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter. International Journal of Systematic and Evolutionary Microbiology 64(Pt 2):631-7 Altererythrobacter xiamenensis sp. nov., an algicidal bacterium isolated from red tide seawater. International Journal of Systematic and Evolutionary Microbiology 59(Pt 12):2973-6 Altererythrobacter marinus sp. nov., isolated from deep seawater. International Journal of Systematic and Evolutionary Microbiology 64(Pt 1):116-21 Altererythrobacter atlanticus sp. nov., isolated from deep-sea sediment. International Journal of Systematic and Evolutionary Microbiology 57(Pt 10):2207-11 Altererythrobacter epoxidivorans gen. nov., sp. nov., an epoxide hydrolase-active, mesophilic marine bacterium isolated from cold-seep sediment, and reclassification of Erythrobacter luteolus Yoon et al. 2005 as Altererythrobacter luteolus comb. nov. International Journal of Systematic and Evolutionary Microbiology 63(Pt 1):93-7 Altererythrobacter troitsensis sp. nov., isolated from the sea urchin Strongylocentrotus intermedius. International Journal of Systematic and Evolutionary Microbiology 63(Pt 3):971-6 Altererythrobacter gangjinensis sp. nov., a marine bacterium isolated from a tidal flat. |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Altererythrobacter genome sequencing - Second Institute of Oceanography |
| Organism |
Tsuneonella dongtanensis KCTC 22672 |
| Analysis Projects |
Tsuneonella dongtanensis KCTC 22672 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
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Contamination Screening Input
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|
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DNA Amplification Method
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|
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
|
|
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DNA Amplification Kit
|
|
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Sequencing Technology
(MIGS-29)
|
ABI 3730 Illumina HiSeq 2500 |
|
Library Method
(MIGS-28)
|
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0031998 |
| Organism Name |
Tsuneonella dongtanensis KCTC 22672
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Tsuneonella
|
| Genus Synonyms |
|
| Species |
Tsuneonella dongtanensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
KCTC 22672
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
KCTC 22672
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.22478
|
| Exemplar Name |
Altererythrobacter dongtanensis
|
| Taxon DOI |
10.1601/tx.22478
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
692370 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Sphingomonadales
|
| NCBI Family |
Erythrobacteraceae
|
| NCBI Genus |
Tsuneonella
|
| NCBI Species |
Tsuneonella dongtanensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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