Studies
|
49,664 |
|
Biosamples
|
134,317 |
|
Sequencing Projects
|
415,585 |
|
Analysis Projects
|
322,562 |
| Organisms | 412,323 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0190583
|
|
Project Name
|
Tsuneonella dongtanensis KCTC 22672
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Tsuneonella Genome sequencing |
|
NCBI BioProject ID
|
319016 |
|
NCBI BioProject Accession
|
PRJNA319016 |
|
NCBI Locus Tag
|
A6F68
|
|
NCBI BioSample Accession
|
SAMN04870882 |
| PI | |
| Added By |
JGI automated process
on 2016-12-10 |
| Last Modified By |
Mahathi Kandimalla
on 2021-03-01 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Environmental |
|
Sequencing Center
|
Second Institute of Oceanography, State Oceanic Administration
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Tsuneonella genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
Genome announcements
Draft Genome Sequence of Altererythrobacter marensis DSM 21428T, Isolated from Seawater.
Mar Genomics Complete genome sequence of a benzo[a]pyrene-degrading bacterium Altererythrobacter epoxidivorans CGMCC 1.7731(T). Show more publications...
Genome announcements
Draft Genome Sequence of Altererythrobacter troitsensis JCM 17037, Isolated from the Sea Urchin Strongylocentrotus intermedius.
Mar Genomics Complete genome sequence of the heavy metal resistant bacterium Altererythrobacter atlanticus 26DY36(T), isolated from deep-sea sediment of the North Atlantic Mid-ocean ridge. |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Altererythrobacter genome sequencing - Second Institute of Oceanography |
| Organism |
Tsuneonella dongtanensis KCTC 22672 |
| Analysis Projects |
Tsuneonella dongtanensis KCTC 22672 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
ABI 3730 Illumina HiSeq 2500 |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
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Library Screening Method
|
|
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Number Of Reads
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|
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Read Size
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|
|
Vector
|
|
| GC Percent |
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0031998 |
| Organism Name |
Tsuneonella dongtanensis KCTC 22672
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Tsuneonella
|
| Genus Synonyms |
|
| Species |
Tsuneonella dongtanensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
KCTC 22672
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
KCTC 22672
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.22478
|
| Exemplar Name |
Altererythrobacter dongtanensis
|
| Taxon DOI |
10.1601/tx.22478
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
692370 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Sphingomonadales
|
| NCBI Family |
Erythrobacteraceae
|
| NCBI Genus |
Tsuneonella
|
| NCBI Species |
Tsuneonella dongtanensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
|
| Motility |
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| Sporulation |
|
| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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