PROJECT INFORMATION | |
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GOLD Project ID
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Gp0190583
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Project Name
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Tsuneonella dongtanensis KCTC 22672
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | Tsuneonella Genome sequencing |
NCBI BioProject Accession
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PRJNA319016 |
NCBI Locus Tag
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A6F68
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NCBI BioSample Accession
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SAMN04870882 |
PI | |
Added By |
JGI automated process
on 2016-12-10 |
Last Modified By |
Mahathi Kandimalla
on 2021-03-01 |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Environmental |
Sequencing Center
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Second Institute of Oceanography, State Oceanic Administration
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Collaborating Institute
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Funding Agency
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Project Description
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Tsuneonella genome sequencing
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Is JGI Project |
No
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Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Genome announcements
Draft Genome Sequence of Altererythrobacter troitsensis JCM 17037, Isolated from the Sea Urchin Strongylocentrotus intermedius.
Mar Genomics Complete genome sequence of a benzo[a]pyrene-degrading bacterium Altererythrobacter epoxidivorans CGMCC 1.7731(T). Show more publications... |
Ignored Publications
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Unassigned Publications
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International Journal of Systematic and Evolutionary Microbiology
61(Pt 4):709-15
Altererythrobacter namhicola sp. nov. and Altererythrobacter aestuarii sp. nov., isolated from seawater.
International Journal of Systematic and Evolutionary Microbiology 61(Pt 9):2035-9 Altererythrobacter dongtanensis sp. nov., isolated from a tidal flat. Show more publications...
International Journal of Systematic and Evolutionary Microbiology
61(Pt 12):2956-61
Altererythrobacter ishigakiensis sp. nov., an astaxanthin-producing bacterium isolated from a marine sediment.
International Journal of Systematic and Evolutionary Microbiology 60(Pt 2):307-11 Altererythrobacter marensis sp. nov., isolated from seawater. International Journal of Systematic and Evolutionary Microbiology 62(Pt 1):28-32 Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter. International Journal of Systematic and Evolutionary Microbiology 64(Pt 2):631-7 Altererythrobacter xiamenensis sp. nov., an algicidal bacterium isolated from red tide seawater. International Journal of Systematic and Evolutionary Microbiology 59(Pt 12):2973-6 Altererythrobacter marinus sp. nov., isolated from deep seawater. International Journal of Systematic and Evolutionary Microbiology 64(Pt 1):116-21 Altererythrobacter atlanticus sp. nov., isolated from deep-sea sediment. International Journal of Systematic and Evolutionary Microbiology 57(Pt 10):2207-11 Altererythrobacter epoxidivorans gen. nov., sp. nov., an epoxide hydrolase-active, mesophilic marine bacterium isolated from cold-seep sediment, and reclassification of Erythrobacter luteolus Yoon et al. 2005 as Altererythrobacter luteolus comb. nov. International Journal of Systematic and Evolutionary Microbiology 63(Pt 1):93-7 Altererythrobacter troitsensis sp. nov., isolated from the sea urchin Strongylocentrotus intermedius. International Journal of Systematic and Evolutionary Microbiology 63(Pt 3):971-6 Altererythrobacter gangjinensis sp. nov., a marine bacterium isolated from a tidal flat. |
SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Altererythrobacter genome sequencing - Second Institute of Oceanography |
Organism |
Tsuneonella dongtanensis KCTC 22672 |
Analysis Projects |
Tsuneonella dongtanensis KCTC 22672 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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ABI 3730 Illumina HiSeq 2500 |
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0031998 |
Organism Name |
Tsuneonella dongtanensis KCTC 22672
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
PROTEOBACTERIA-ALPHA
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Genus |
Tsuneonella
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Genus Synonyms |
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Species |
Tsuneonella dongtanensis
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Subspecies |
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Species Synonyms |
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Strain |
KCTC 22672
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
KCTC 22672
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Type Strain |
Yes
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Exemplar DOI |
10.1601/ex.22478
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Exemplar Name |
Altererythrobacter dongtanensis
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Taxon DOI |
10.1601/tx.22478
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
692370 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Proteobacteria
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NCBI Class |
Alphaproteobacteria
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NCBI Order |
Sphingomonadales
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NCBI Family |
Erythrobacteraceae
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NCBI Genus |
Tsuneonella
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NCBI Species |
Tsuneonella dongtanensis
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ISOLATION CLASSIFICATION | |
Ecosystem |
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Ecosystem Category |
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Ecosystem Type |
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Ecosystem Subtype |
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Specific Ecosystem |
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
Gram-
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
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Metabolisms |
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Phenotypes |
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Energy Sources |
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