PROJECT INFORMATION
GOLD Project ID
Gp0190583  
Project Name
Tsuneonella dongtanensis KCTC 22672  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Tsuneonella Genome sequencing
NCBI BioProject Accession PRJNA319016
NCBI Locus Tag
A6F68  
NCBI BioSample Accession SAMN04870882
PI
Added By JGI automated process on 2016-12-10
Last Modified By Mahathi Kandimalla on 2021-03-01
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center Second Institute of Oceanography, State Oceanic Administration
Collaborating Institute
  
Funding Agency
  
Project Description
Tsuneonella genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications Genome announcements Draft Genome Sequence of Altererythrobacter troitsensis JCM 17037, Isolated from the Sea Urchin Strongylocentrotus intermedius.

Mar Genomics Complete genome sequence of a benzo[a]pyrene-degrading bacterium Altererythrobacter epoxidivorans CGMCC 1.7731(T).

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Ignored Publications
  
Unassigned Publications International Journal of Systematic and Evolutionary Microbiology 61(Pt 4):709-15 Altererythrobacter namhicola sp. nov. and Altererythrobacter aestuarii sp. nov., isolated from seawater.

International Journal of Systematic and Evolutionary Microbiology 61(Pt 9):2035-9 Altererythrobacter dongtanensis sp. nov., isolated from a tidal flat.

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International Journal of Systematic and Evolutionary Microbiology 61(Pt 12):2956-61 Altererythrobacter ishigakiensis sp. nov., an astaxanthin-producing bacterium isolated from a marine sediment.

International Journal of Systematic and Evolutionary Microbiology 60(Pt 2):307-11 Altererythrobacter marensis sp. nov., isolated from seawater.

International Journal of Systematic and Evolutionary Microbiology 62(Pt 1):28-32 Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter.

International Journal of Systematic and Evolutionary Microbiology 64(Pt 2):631-7 Altererythrobacter xiamenensis sp. nov., an algicidal bacterium isolated from red tide seawater.

International Journal of Systematic and Evolutionary Microbiology 59(Pt 12):2973-6 Altererythrobacter marinus sp. nov., isolated from deep seawater.

International Journal of Systematic and Evolutionary Microbiology 64(Pt 1):116-21 Altererythrobacter atlanticus sp. nov., isolated from deep-sea sediment.

International Journal of Systematic and Evolutionary Microbiology 57(Pt 10):2207-11 Altererythrobacter epoxidivorans gen. nov., sp. nov., an epoxide hydrolase-active, mesophilic marine bacterium isolated from cold-seep sediment, and reclassification of Erythrobacter luteolus Yoon et al. 2005 as Altererythrobacter luteolus comb. nov.

International Journal of Systematic and Evolutionary Microbiology 63(Pt 1):93-7 Altererythrobacter troitsensis sp. nov., isolated from the sea urchin Strongylocentrotus intermedius.

International Journal of Systematic and Evolutionary Microbiology 63(Pt 3):971-6 Altererythrobacter gangjinensis sp. nov., a marine bacterium isolated from a tidal flat.

SRA Experiment
  
PROJECT COMPOSITION
Study Altererythrobacter genome sequencing - Second Institute of Oceanography
Organism Tsuneonella dongtanensis KCTC 22672
Analysis Projects Tsuneonella dongtanensis KCTC 22672
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) ABI 3730
Illumina HiSeq 2500
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0031998
Organism Name
Tsuneonella dongtanensis KCTC 22672  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Tsuneonella  
Genus Synonyms
  
Species
Tsuneonella dongtanensis  
Subspecies
  
Species Synonyms
  
Strain
KCTC 22672  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
KCTC 22672  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.22478  
Exemplar Name
Altererythrobacter dongtanensis  
Taxon DOI
10.1601/tx.22478  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 692370
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Erythrobacteraceae  
NCBI Genus
Tsuneonella  
NCBI Species
Tsuneonella dongtanensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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