PROJECT INFORMATION
GOLD Project ID
Gp0177654  
Project Name
Dehalococcoidia bacterium SCGC AG-205-G03  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Dehalococcoidia bacterium SCGC AG-205-G03
NCBI BioProject Accession PRJNA368279
NCBI Locus Tag
BY984  
NCBI BioSample Accession SAMN07501456
PI Kenneth Wasmund
Added By JGI automated process on 2016-12-02
Last Modified By JGI automated process on 2022-09-05
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Single amplified genome (SAG) sequencing of marine subsurface Chloroflexi  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60000584
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX7204244  (Link to NCBI )
Experiment Title Dehalococcoidia bacterium SCGC AG-205-G03
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection other
Library Name BHOOX
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Metabolic diversity of uncharacterised clades of marine subsurface Dehalococcoidia
Organism Dehalococcoidia bacterium SCGC AG-205-G03
Analysis Projects Dehalococcoidia bacterium SCGC AG-205-G03 (contamination screened)
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0336237
Organism Name
Dehalococcoidia bacterium SCGC AG-205-G03  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXI  
Genus
  
Genus Synonyms
  
Species
Dehalococcoidia bacterium SCGC AG-205-G03  
Subspecies
  
Species Synonyms
  
Strain
SCGC AG-205-G03  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2012749
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexi  
NCBI Class
Dehalococcoidia  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
Dehalococcoidia bacterium SCGC AG-205-G03  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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