PROJECT INFORMATION
GOLD Project ID
Gp0175881  
Project Name
Metatranscriptome of Terfezia boudieri - Cistus incanus - 120 days - ENDO_Rep3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metatranscriptome of Terfezia boudieri - Cistus incanus - 120 days - ENDO_Rep3
NCBI BioProject Accession PRJNA368206
NCBI Locus Tag
BY911  
NCBI BioSample Accession SAMN06269017
Source Sample ID
PI Francis M. Martin
Added By JGI automated process on 2016-11-17
Last Modified By JGI automated process on 2022-12-26
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Mycorrhizal fungal communities from Be'er Sheva, South District, Israel for deep transcriptomics studies  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001022
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX3363274  (Link to NCBI )
Experiment Title Terfezia boudieri - Cistus incanus Metatranscriptome
Exp Library Strategy OTHER
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name AZOAS
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Mycorrhizal fungal microbial communities from various locations for deep transcriptomics studies
Biosample Metatranscriptome of Terfezia boudieri - Cistus incanus - 120 days - ENDO_Rep3
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina RNASeq w/PolyA Selection, Plates  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Metatranscriptome of Terfezia boudieri - Cistus incanus - 120 days - ENDO_Rep3
Other Names (alias, synonyms, short names)
  
Sample Description
Mycorrhizal fungal communities from Be'er Sheva, South District, Israel for deep transcriptomics studies  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1670606
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fungi  
Ecosystem Type
Mycelium  
Ecosystem Subtype
  
Specific Ecosystem
  
EXPERIMENT
Experimental Conditions
  

 

 

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