PROJECT INFORMATION
GOLD Project ID
Gp0175724  
Project Name
Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT
NCBI BioProject ID 368152
NCBI BioProject Accession PRJNA368152
NCBI Locus Tag
BY857  
NCBI BioSample Accession SAMN06269106
PI Christopher S. Miller
Added By JGI automated process on 2016-11-17
Last Modified By JGI automated process on 2020-04-04
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3015106  (Link to NCBI )
Experiment Title Open water 3 Core 4 Depth 3 metatranscriptome
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RT-PCR
Library Name BOGYN
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls
Biosample Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT
Analysis Projects Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT (Metagenome Metatranscriptome Expression - Self)
Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT (Metagenome Metatranscriptome)
Number of Analysis Projects (AP)
2  
Number of Derived Analyis Projects (DAP)
1  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina RNASeq w/rRNA Depletion, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaT
Other Names (alias, synonyms, short names)
  
Sample Description
Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1325974
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Wetlands  
Specific Ecosystem
  

 

 

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