PROJECT INFORMATION
GOLD Project ID
Gp0158791  
Project Name
Desulfomicrobium baculatum transcriptome - DSM 4028 D-BAC3-73#1 transcriptome  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Desulfomicrobium baculatum transcriptome - DSM 4028 D-BAC3-73#1 transcriptome
NCBI BioProject ID 372754
NCBI BioProject Accession PRJNA372754
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06313929
PI Eric Collins
Added By JGI automated process on 2016-10-08
Last Modified By JGI automated process on 2021-01-15
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Transcriptome of Desulfomicrobium baculatum DSM 4028 strain evolved for 73 generations  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid RNA
Sequencing Strategy
Transcriptome  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX7139305  (Link to NCBI )
Experiment Title Desulfomicrobium baculatum transcriptome
Exp Library Strategy RNA_SEQ
Library Source TRANSCRIPTOMIC
Library Selection other
Library Name ANPUA
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Unraveling the Genetic Basis of an Ancient Geochemical Biomarker
Organism Desulfomicrobium baculatum DSM 4028 D-BAC3-73
Analysis Projects
  
Number of Analysis Projects (AP)
0  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Low Input RNASeq w/rRNA Depletion, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0303866
Organism Name
Desulfomicrobium baculatum DSM 4028 D-BAC3-73  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Desulfomicrobium  
Genus Synonyms
  
Species
Desulfomicrobium baculatum  
Subspecies
  
Species Synonyms
  
Strain
DSM 4028 D-BAC3-73  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3477  
Exemplar Name
Desulfomicrobium baculatum  
Taxon DOI
10.1601/tx.3517  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 899
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Desulfovibrionales  
NCBI Family
Desulfomicrobiaceae  
NCBI Genus
Desulfomicrobium  
NCBI Species
Desulfomicrobium baculatum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
EXPERIMENT
Experimental Conditions
evolved for 73 generations  

 

 

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