PROJECT INFORMATION
GOLD Project ID
Gp0155232  
Project Name
Salegentibacter salegens ACAM 48  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Salegentibacter salegens ACAM 48
NCBI BioProject Accession PRJNA345703
NCBI Locus Tag
BJV73  
NCBI BioSample Accession SAMN05878281
PI Rick Cavicchioli
Added By JGI automated process on 2016-08-29
Last Modified By JGI automated process on 2021-11-07
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genome sequencing to study seasonal variation in Antarctic microbial communities  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001034
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX2234087  (Link to NCBI )
Experiment Title Salegentibacter salegens ACAM 48
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BCNYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2234086  (Link to NCBI )
Experiment Title Salegentibacter salegens ACAM 48
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BCNYB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Saline lake microbial communities from various lakes in Antarctica
Organism Salegentibacter salegens ACAM 48
Analysis Projects Salegentibacter salegens ACAM 48
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0146560
Organism Name
Salegentibacter salegens ACAM 48  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Salegentibacter  
Genus Synonyms
  
Species
Salegentibacter salegens  
Subspecies
  
Species Synonyms
  
Strain
ACAM 48  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8112  
Exemplar Name
Salegentibacter salegens  
Taxon DOI
10.1601/tx.8191  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 143223
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Salegentibacter  
NCBI Species
Salegentibacter salegens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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