Studies
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56,334 |
|
Biosamples
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196,988 |
|
Sequencing Projects
|
525,360 |
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Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0154084
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Project Name
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Desulfotomaculum copahuensis CINDEFI1
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|
Other Names
|
Desulfotomaculum sp. LMa1
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Legacy GOLD ID
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|
| NCBI BioProject Name | Desulfotomaculum sp. LMa1 Genome sequencing and assembly |
|
NCBI BioProject Accession
|
PRJNA319015 |
|
NCBI Locus Tag
|
A6M21
|
|
NCBI BioSample Accession
|
SAMN04875414 |
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Source Sample ID
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|
| PI | Graciana Willis Poratti |
| Added By | Graciana Willis Poratti on 2016-07-25 |
| Last Modified By | Supratim Mukherjee on 2022-09-21 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Collaborating Institute
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Funding Agency
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Project Description
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Sulfate-reducing bacteria are important for bioremediation processes, especially those for heavy metal bioprecipitation. This project will provide a more understanding of the mecanism that these group of bacteria use to resist high concentration of heavy metals and other extreme condition, related with the environment where this strain was isolated.
|
| Is JGI Project |
No
|
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Genome announcements: Draft Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum copahuensis Strain CINDEFI1 Isolated from the Geothermal Copahue System, Neuquén, Argentina. PubMed: 27540078 DOI: 10.1128/genomeA.00870-16 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Desulfotomaculum copahuensis CINDEFI1 genome project |
| Organism |
Desulfotomaculum copahuensis CINDEFI1 |
| Analysis Projects |
Desulfotomaculum copahuensis CINDEFI1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq 2500 Illumina HiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
57.1
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0145814 |
| Organism Name |
Desulfotomaculum copahuensis CINDEFI1
|
| Other names (alias, synonyms, short names, common names) |
Desulfotomaculum sp. LMa1
|
| Organism Domain |
BACTERIAL
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| Phylogeny |
BACILLOTA
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| Genus |
Desulfotomaculum
|
| Genus Synonyms |
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| Species |
Desulfotomaculum copahuensis
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| Subspecies |
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| Species Synonyms |
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| Strain |
CINDEFI1
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1838280 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Bacillota
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| NCBI Class |
Clostridia
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| NCBI Order |
Eubacteriales
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| NCBI Family |
Desulfotomaculaceae
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| NCBI Genus |
Desulfotomaculum
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| NCBI Species |
Desulfotomaculum copahuensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Terrestrial
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| Ecosystem Type |
Volcanic
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| Ecosystem Subtype |
Fumaroles
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
Rod-shaped
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| Motility |
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| Sporulation |
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| Temperature Range |
Thermotolerant
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| Salinity |
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| pH |
7
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
Sulfate reducer |
| Phenotypes |
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| Energy Sources |
Heterotroph |
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