Studies
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56,036 |
|
Biosamples
|
191,586 |
|
Sequencing Projects
|
515,941 |
|
Analysis Projects
|
381,622 |
| Organisms | 480,438 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0151184
|
|
Project Name
|
Bifidobacterium asteroides Bi_198
|
|
Other Names
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|
Legacy GOLD ID
|
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| NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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Source Sample ID
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| PI | Philipp Engel |
| Added By | Philipp Engel on 2016-07-01 |
| Last Modified By | Supratim Mukherjee on 2018-06-25 |
| Project Comments |
|
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Project Status
|
Permanent Draft
|
|
Project Relevance
|
|
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Sequencing Center
|
University of Lausanne
|
|
Collaborating Institute
|
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Funding Agency
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Project Description
|
Sequencing reference genomes for honeybee gut microbiota database
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Bee_metagenome_database |
| Organism |
Bifidobacterium asteroides Bi_198 |
| Analysis Projects |
Bifidobacterium asteroides Bi_198 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
|
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
|
Illumina MiSeq |
|
Library Method
(MIGS-28)
|
TruSeq Nano gDNA
|
|
Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
|
250bp PE
|
|
Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0145511 |
| Organism Name |
Bifidobacterium asteroides Bi_198
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Bifidobacterium
|
| Genus Synonyms |
|
| Species |
Bifidobacterium asteroides
|
| Subspecies |
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| Species Synonyms |
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| Strain |
Bi_198
|
| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1684 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinomycetota
|
| NCBI Class |
Actinomycetes
|
| NCBI Order |
Bifidobacteriales
|
| NCBI Family |
Bifidobacteriaceae
|
| NCBI Genus |
Bifidobacterium
|
| NCBI Species |
Bifidobacterium asteroides
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Arthropoda: Insects
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Gut
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
|
| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Insect gut |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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