PROJECT INFORMATION
GOLD Project ID
Gp0151102  
Project Name
Limnohabitans curvus MWH-C5  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Limnohabitans genomes
NCBI BioProject Accession PRJNA312876
NCBI Locus Tag
  
NCBI BioSample Accession SAMN06661508
PI Vojtech Kasalicky
Added By Vojtech Kasalicky on 2016-06-29
Last Modified By Galina Ovchinnikova on 2020-09-24
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Eurofins MWG Operon (International)
Collaborating Institute Biology Centre of the ASCR, v. v. i. (Czech Republic)
Funding Agency Academy of Sciences of the Czech Republic
Project Description
Genome sequencing of Limnohabitans strains  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Limnohabitans genomes
Organism Limnohabitans curvus MWH-C5
Analysis Projects Limnohabitans curvus MWH-C5
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
Illumina Regular Fragment, Illumina 8kb-LJD  
Library Layout
  
Library Screening Method
  
Number Of Reads
3795000  
Read Size
300 bp paired-reads, mate pairs  
Vector
  
GC Percent
56  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0145445
Organism Name
Limnohabitans curvus MWH-C5  
Other names (alias, synonyms, short names, common names)
Limnohabitans curvus MWH-C5 (LimA)  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA  
Genus
Limnohabitans  
Genus Synonyms
  
Species
Limnohabitans curvus  
Subspecies
  
Species Synonyms
  
Strain
MWH-C5  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 323423
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Limnohabitans  
NCBI Species
Limnohabitans curvus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Epilimnion  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Curved-shaped  
Motility
  
Sporulation
  
Temperature Range
Psychrotolerant  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Undefined
Known Habitats Lake water
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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