Studies
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52,460 |
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Biosamples
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170,231 |
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Sequencing Projects
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472,495 |
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Analysis Projects
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360,348 |
| Organisms | 460,370 |
| PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0150639
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Project Name
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Wohlfahrtiimonas chitiniclastica 20
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Wohlfahrtiimonas chitiniclastica 20 genome sequencing | ||||||||||||||||||||
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NCBI BioProject Accession
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PRJNA319640 |
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NCBI Locus Tag
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A6V30
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NCBI BioSample Accession
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SAMN04902032 |
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| PI | |||||||||||||||||||||
| Added By |
JGI automated process
on 2016-06-28 |
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| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Medical |
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Sequencing Center
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Universidade do Estado do Rio de Janeiro
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Collaborating Institute
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Funding Agency
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Project Description
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Wohlfahrtiimonas chitiniclastica is an emerging zoonotic bacterium commensally living in larvae of particular flies. It has been associated with human and animal infections but never isolated from food. In the present study, a whole chicken carcass was rinsed in buffered peptone water which was then inoculated into BHI and the growth plated onto selective medium. Species identification was performed by MALDI-TOF MS. Those bacteria identified as W. chitiniclastica were subjected to 16S rRNA sequencing for confirmation and MEGA software was used to obtain their phylogenetic position. The findings of this study raise concerns regarding the abattoir, transport and stock practices of frozen meat carcasses and should be of interest with regard to microbiology, entomology and food production.
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Wohlfahrtiimonas chitiniclastica 20 genome sequencing |
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| Organism |
Wohlfahrtiimonas chitiniclastica 20 |
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| Analysis Projects |
Wohlfahrtiimonas chitiniclastica 20 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| ORGANISM NAME | |
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| GOLD Organism ID |
Go0145006 |
| Organism Name |
Wohlfahrtiimonas chitiniclastica 20
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-GAMMA
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| Genus |
Wohlfahrtiimonas
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| Genus Synonyms |
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| Species |
Wohlfahrtiimonas chitiniclastica
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| Subspecies |
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| Species Synonyms |
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| Strain |
20
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
400946 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Gammaproteobacteria
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| NCBI Order |
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| NCBI Family |
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| NCBI Genus |
Wohlfahrtiimonas
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| NCBI Species |
Wohlfahrtiimonas chitiniclastica
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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