PROJECT INFORMATION
GOLD Project ID
Gp0150501  
Project Name
Candidatus Nitrospira nitrosa COMA1  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome of Candidatus Nitrospira nitrosa strain
NCBI BioProject Accession PRJEB11445
NCBI Locus Tag
COMA1  
NCBI BioSample Accession SAMEA3638995
Source Sample ID
PI Unknown
Added By JGI automated process on 2016-06-28
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Vienna (Austria)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Nature: 528(7583):555-9 Complete nitrification by a single microorganism.
PubMed: 26610025 DOI: 10.1038/nature16459
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX1228365  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
SRA Submission ID 2058933
Submitter David Berry ([email protected])
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection size fractionation
Library Name LIB-MA-99-A-1
Library Layout PAIRED
Library Instrument Illumina MiSeq
 
SRA Experiment Id ERX1228366  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
SRA Submission ID 2058934
Submitter David Berry ([email protected])
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection size fractionation
Library Name LIB-MA-99-A-2
Library Layout PAIRED
Library Instrument Illumina MiSeq
 
SRA Experiment Id ERX1228367  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
SRA Submission ID 2058935
Submitter David Berry ([email protected])
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection size fractionation
Library Name LIB-MA-100-A-1
Library Layout PAIRED
Library Instrument Illumina MiSeq
 
SRA Experiment Id ERX1228368  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
SRA Submission ID 2058936
Submitter David Berry ([email protected])
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection size fractionation
Library Name LIB-MA-100-A-2
Library Layout PAIRED
Library Instrument Illumina MiSeq
PROJECT COMPOSITION
Study Genome of Candidatus Nitrospira nitrosa strain
Organism Candidatus Nitrospira nitrosa COMA1
Analysis Projects Candidatus Nitrospira nitrosa COMA1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0144872
Organism Name
Candidatus Nitrospira nitrosa COMA1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
NITROSPIROTA  
Genus
  
Genus Synonyms
  
Species
Candidatus Nitrospira nitrosa COMA1  
Subspecies
  
Species Synonyms
  
Strain
COMA1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1742972
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Nitrospirota  
NCBI Class
Nitrospiria  
NCBI Order
Nitrospirales  
NCBI Family
Nitrospiraceae  
NCBI Genus
Nitrospira  
NCBI Species
Candidatus Nitrospira nitrosa  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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