PROJECT INFORMATION
GOLD Project ID
Gp0150386  
Project Name
Thalassobius autumnalis CECT 5118  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Whole genome sequencing of Thalassobius mediterraneus CECT 5118
NCBI BioProject Accession PRJEB10710
NCBI Locus Tag
TL5118  
NCBI BioSample Accession SAMEA3531082
PI
Added By JGI automated process on 2016-06-28
Last Modified By Supratim Mukherjee on 2021-03-25
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Spanish Type Culture Collection (CECT) (Spain)
Collaborating Institute
  
Funding Agency
  
Project Description
Thalassobius mediterraneus is a member of the family Rhodobacteraceae described in 2005 by Arahal et al. Genome sequencing of Thalassobius mediterraneus CECT 5118 was done using the Illumina Miseq system by the Central Service of Support to Experimental Research (SCSIE) of the University of Valencia (Spain).  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Syst. Appl. Microbiol. 17(4):589-600 Numerical Taxonomy of Aerobic, Gram-negative Bacteria associated with Oysters and Surrounding Seawater of the Mediterranean Coast

Frontiers in microbiology Comparative Genomics of Thalassobius Including the Description of Thalassobius activus sp. nov., and Thalassobius autumnalis sp. nov.

Other Publications
  
Ignored Publications International Journal of Systematic and Evolutionary Microbiology 55(Pt 6):2371-6 Thalassobius mediterraneus gen. nov., sp. nov., and reclassification of Ruegeria gelatinovorans as Thalassobius gelatinovorus comb. nov.

Unassigned Publications International Journal of Systematic and Evolutionary Microbiology 55(Pt 6):2371-6 Thalassobius mediterraneus gen. nov., sp. nov., and reclassification of Ruegeria gelatinovorans as Thalassobius gelatinovorus comb. nov.

SRA Experiment
 
SRA Experiment Id ERX1091843  (Link to NCBI )
Experiment Title Illumina MiSeq paired end sequencing
SRA Submission ID 2015210
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument Illumina MiSeq
PROJECT COMPOSITION
Study Whole genome sequencing of Thalassobius mediterraneus CECT 5118
Organism Thalassobius autumnalis CECT 5118
Analysis Projects Thalassobius autumnalis CECT 5118
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0144758
Organism Name
Thalassobius autumnalis CECT 5118  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Thalassobius  
Genus Synonyms
  
Species
Thalassobius autumnalis  
Subspecies
  
Species Synonyms
  
Strain
CECT 5118  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
CECT 5118, LMG 29904  
Type Strain
  
Exemplar DOI
10.1601/ex.31491  
Exemplar Name
Thalassobius autumnalis  
Taxon DOI
10.1601/tx.31491  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2072972
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Roseobacteraceae  
NCBI Genus
Thalassobius  
NCBI Species
Thalassobius autumnalis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Coastal  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccoid  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Coastal sea water
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?