Studies
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45,806 |
|
Biosamples
|
102,809 |
|
Sequencing Projects
|
359,400 |
|
Analysis Projects
|
285,833 |
| Organisms | 388,793 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
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Gp0149737
|
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Project Name
|
Nodularia spumigena CENA596
|
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Other Names
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Legacy GOLD ID
|
|
| NCBI BioProject Name | Nodularia spumigena CENA596 genome |
|
NCBI BioProject ID
|
315832 |
|
NCBI BioProject Accession
|
PRJNA315832 |
|
NCBI Locus Tag
|
A2T98
|
|
NCBI BioSample Accession
|
SAMN04570624 |
| PI | |
| Added By |
JGI automated process
on 2016-06-28 |
| Last Modified By |
Hema Katta
on 2018-01-26 |
| Project Comments |
|
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Project Status
|
Permanent Draft
|
|
Project Relevance
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Environmental |
|
Sequencing Center
|
Center for Nuclear Energy in Agriculture - University of Sao Paulo
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Collaborating Institute
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Funding Agency
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Project Description
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This project aims to conduct genomic and functional analysis of the Brazilian isolate of N. spumigena CENA596 to identify the gene cluster and evaluate the production of the hepatotoxin nodularin. This study will contribute to the understanding of the genetic, ecological and evolutionary factors related to nodularin production by cyanobacteria and also for the development of rapid and sensitive methods for the detection and monitoring of cyanobacteria and their toxins in the environment.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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Project Information
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Database
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Genome Publications
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Genome announcements
Draft Genome Assembly of the Bloom-Forming Cyanobacterium Nodularia spumigena Strain CENA596 in Shrimp Production Ponds.
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Genomic and functional analysis of the bloom-forming Nodularia spumigena CENA596 |
| Organism |
Nodularia spumigena CENA596 |
| Analysis Projects |
Nodularia spumigena CENA596 |
| Number of Analysis Projects (AP) |
1
|
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0144143 |
| Organism Name |
Nodularia spumigena CENA596
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
CYANOBACTERIA
|
| Genus |
Nodularia
|
| Genus Synonyms |
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| Species |
Nodularia spumigena
|
| Subspecies |
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| Species Synonyms |
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| Strain |
CENA596
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1819295 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Cyanobacteria
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| NCBI Class |
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| NCBI Order |
Nostocales
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| NCBI Family |
Aphanizomenonaceae
|
| NCBI Genus |
Nodularia
|
| NCBI Species |
Nodularia spumigena
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| Cell Diameter |
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| Cell Length |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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