PROJECT INFORMATION
GOLD Project ID
Gp0149737  
Project Name
Nodularia spumigena CENA596  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Nodularia spumigena CENA596 genome
NCBI BioProject ID 315832
NCBI BioProject Accession PRJNA315832
NCBI Locus Tag
A2T98  
NCBI BioSample Accession SAMN04570624
PI
Added By JGI automated process on 2016-06-28
Last Modified By Hema Katta on 2018-01-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Center for Nuclear Energy in Agriculture - University of Sao Paulo
Collaborating Institute
  
Funding Agency
  
Project Description
This project aims to conduct genomic and functional analysis of the Brazilian isolate of N. spumigena CENA596 to identify the gene cluster and evaluate the production of the hepatotoxin nodularin. This study will contribute to the understanding of the genetic, ecological and evolutionary factors related to nodularin production by cyanobacteria and also for the development of rapid and sensitive methods for the detection and monitoring of cyanobacteria and their toxins in the environment.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Assembly of the Bloom-Forming Cyanobacterium Nodularia spumigena Strain CENA596 in Shrimp Production Ponds.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genomic and functional analysis of the bloom-forming Nodularia spumigena CENA596
Organism Nodularia spumigena CENA596
Analysis Projects Nodularia spumigena CENA596
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0144143
Organism Name
Nodularia spumigena CENA596  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Nodularia  
Genus Synonyms
  
Species
Nodularia spumigena  
Subspecies
  
Species Synonyms
  
Strain
CENA596  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1819295
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Nostocales  
NCBI Family
Aphanizomenonaceae  
NCBI Genus
Nodularia  
NCBI Species
Nodularia spumigena  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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