PROJECT INFORMATION
GOLD Project ID
Gp0148790  
Project Name
Pseudoclostridium thermosuccinogenes DSM 5807  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Pseudoclostridium thermosuccinogenes DSM 5807
NCBI BioProject Accession PRJNA335189
NCBI Locus Tag
BD817  
NCBI BioSample Accession SAMN05444341
PI Markus Göker
Added By JGI automated process on 2016-06-17
Last Modified By JGI automated process on 2022-03-14
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing as part of the Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60001024
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Pseudoclostridium thermosuccinogenes DSM 5807
Analysis Projects Pseudoclostridium thermosuccinogenes DSM 5807
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013638
Organism Name
Pseudoclostridium thermosuccinogenes DSM 5807  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Pseudoclostridium  
Genus Synonyms
  
Species
Pseudoclostridium thermosuccinogenes  
Subspecies
  
Species Synonyms
  
Strain
DSM 5807  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 5807  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4044  
Exemplar Name
Clostridium thermosuccinogenes  
Taxon DOI
10.1601/tx.4044  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 84032
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Eubacteriales  
NCBI Family
Oscillospiraceae  
NCBI Genus
Pseudoclostridium  
NCBI Species
Pseudoclostridium thermosuccinogenes  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 159451
Genbank 16S ID Y18180
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
0.3-0.4 um  
Cell Length
2.0-4.0 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Plants
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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