PROJECT INFORMATION
GOLD Project ID
Gp0148768  
Project Name
Algoriphagus halophilus DSM 15292  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Algoriphagus halophilus DSM 15292
NCBI BioProject Accession PRJNA331683
NCBI Locus Tag
BC955  
NCBI BioSample Accession SAMN05444394
PI Markus Göker
Added By JGI automated process on 2016-06-17
Last Modified By JGI automated process on 2022-03-14
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing as part of the Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60001024
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX2503693  (Link to NCBI )
Experiment Title Algoriphagus halophilus DSM 15292
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BBOPH
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Archaeal and Bacterial Type Strains, Phase II (KMG-II): from individual species to whole genera
Organism Algoriphagus halophilus DSM 15292
Analysis Projects Algoriphagus halophilus DSM 15292
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0027308
Organism Name
Algoriphagus halophilus DSM 15292  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Algoriphagus  
Genus Synonyms
  
Species
Algoriphagus halophilus  
Subspecies
  
Species Synonyms
  
Strain
DSM 15292  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 15292  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8302  
Exemplar Name
Algoriphagus halophilus  
Taxon DOI
10.1601/tx.8454  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 226505
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Cyclobacteriaceae  
NCBI Genus
Algoriphagus  
NCBI Species
Algoriphagus halophilus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY264839
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sediment
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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