Studies
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56,335 |
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Biosamples
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196,988 |
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Sequencing Projects
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525,361 |
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Analysis Projects
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384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
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GOLD Project ID
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Gp0145428
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Project Name
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Candidatus Magnetominusculus xianensis HCH-1
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Candidatus Magnetominusculus xianensis HCH-1 |
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NCBI BioProject Accession
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PRJNA300727 |
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NCBI Locus Tag
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ASN18
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NCBI BioSample Accession
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SAMN04229298 |
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Source Sample ID
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| PI | Unknown |
| Added By | JGI automated process on 2016-05-18 |
| Last Modified By | Mahathi Kandimalla on 2022-05-20 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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Institute of Geology and Geophysics, Chinese Academy of Sciences
(China)
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Collaborating Institute
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Funding Agency
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Project Description
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Magnetotactic bacteria (MTB), a diverse group of bacteria that align and swim along the geomagnetic field lines, are considered as a classic example for microbial biomineralization. These bacteria actively accumulate large amount of ferrous ion, ferric ion or both and synthesize intracellular, membrane-bounded crystals of magnetite and/or greigite called magnetosomes, which are normally individually less than 150 nm in size and arranged into chain-like structures in order to optimize the cellular magnetic dipole moment. The ubiquity and abundance of MTB in nature suggest their larger role in the biogeochemical cycling of iron than previously believed. In contrary to their widespread distribution, only a few of MTB strains have been isolated and cultivated, which poorly represents the true diversity of MTB in nature. Here the draft genome of an uncultivated MTB Candidatus Magnetominusculus xianensis belonging to the Nitrospirae phylum was sequenced, which will provide an in-depth understanding of the origin, biomineralization and metabolism of MTB in nature.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Nitrospirae bacterium HCH-1 Genome sequencing |
| Organism |
Candidatus Magnetominusculus xianensis HCH-1 |
| Analysis Projects |
Candidatus Magnetominusculus xianensis HCH-1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina HiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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| ORGANISM NAME | |
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| GOLD Organism ID |
Go0140320 |
| Organism Name |
Candidatus Magnetominusculus xianensis HCH-1
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
NITROSPIROTA
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| Genus |
Candidatus Magnetominusculus
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| Genus Synonyms |
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| Species |
Candidatus Magnetominusculus xianensis
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| Subspecies |
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| Species Synonyms |
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| Strain |
HCH-1
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| Exemplar DOI |
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| Taxon DOI |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1748249 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Nitrospirota
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| NCBI Class |
Nitrospiria
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| NCBI Order |
Nitrospirales
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| NCBI Family |
Nitrospiraceae
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| NCBI Genus |
Candidatus Magnetominusculus
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| NCBI Species |
Candidatus Magnetominusculus xianensis
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