Studies
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56,336 |
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Biosamples
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196,971 |
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Sequencing Projects
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525,344 |
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Analysis Projects
|
385,119 |
| Organisms | 484,224 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0144578
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Project Name
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Dechloromonas denitrificans ATCC BAA-841
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Dechloromonas denitrificans strain:ATCC BAA-841 |
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NCBI BioProject Accession
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PRJNA305142 |
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NCBI Locus Tag
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AT959
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NCBI BioSample Accession
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SAMN04317214 |
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Source Sample ID
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| PI | Unknown |
| Added By | JGI automated process on 2016-05-18 |
| Last Modified By | Supratim Mukherjee on 2017-03-29 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Environmental |
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Sequencing Center
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Korea Advanced Institute of Science and Technology
(South Korea)
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Collaborating Institute
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Funding Agency
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Project Description
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This organism harbors a clade II nitrous oxide reductase, which is hypothesized to function as the nitrous oxide sink in the environment. Thus, this organism has great potential to be utilized in development of nitrous oxide removal technology. Nitrous oxide is a very potent greenhouse gas and an ozone depleting agent that can have serious consequences to the environment if released to the atmosphere in large quantity.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Dechloromonas denitrificans strain:ATCC BAA-841 Genome sequencing |
| Organism |
Dechloromonas denitrificans ATCC BAA-841 |
| Analysis Projects |
Dechloromonas denitrificans ATCC BAA-841 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0139502 |
| Organism Name |
Dechloromonas denitrificans ATCC BAA-841
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PSEUDOMONADOTA
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| Genus |
Dechloromonas
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| Genus Synonyms |
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| Species |
Dechloromonas denitrificans
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| Subspecies |
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| Species Synonyms |
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| Strain |
ATCC BAA-841
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
ATCC BAA-841
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.9448
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| Exemplar Name |
Dechloromonas denitrificans
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| Taxon DOI |
10.1601/tx.9448
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
281362 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Pseudomonadota
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| NCBI Class |
Betaproteobacteria
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| NCBI Order |
Rhodocyclales
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| NCBI Family |
Azonexaceae
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| NCBI Genus |
Dechloromonas
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| NCBI Species |
Dechloromonas denitrificans
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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