PROJECT INFORMATION
GOLD Project ID
Gp0144558  
Project Name
Moellerella wisconsensis GTA-1455  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Genome sequencing of Gram negative bacterial species isolated from beef meat enriched in antibiotics
NCBI BioProject ID 254477
NCBI BioProject Accession PRJNA254477
NCBI Locus Tag
VK86  
NCBI BioSample Accession SAMN03389448
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Canadian Food Inspection Agency
Collaborating Institute
  
Funding Agency
  
Project Description
Current genetic target-based methods for detection of pathogens in food products can lead to false positives due to cross-reaction of diagnostic tests with other organisms in the food samples. This lack of specificity can significantly delay the diagnostic testing procedures, leading to increased holding times for food manufacturers, and delays in food recalls during outbreak investigations. This project will use high throughput DNA sequencing technologies to generate a database of microorganisms co-enriched with pathogenic E. coli in beef samples that can be used to assess specificity of DNA-based diagnostic tests before deployment to food testing laboratories. The database will serve as an adjunct resource in the generation of validation data for molecular methods developed for detection of dangerous bacteria in foods.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Genome sequencing of Gram negative bacterial species isolated from beef meat enriched in antibiotics
Organism Moellerella wisconsensis GTA-1455
Analysis Projects Moellerella wisconsensis GTA-1455
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0139484
Organism Name
Moellerella wisconsensis GTA-1455  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Moellerella  
Genus Synonyms
  
Species
Moellerella wisconsensis  
Subspecies
  
Species Synonyms
  
Strain
GTA-1455  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 158849
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Morganellaceae  
NCBI Genus
Moellerella  
NCBI Species
Moellerella wisconsensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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