PROJECT INFORMATION
GOLD Project ID
Gp0144130  
Project Name
Aspergillus oryzae RIB40  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Aspergillus oryzae RIB40
NCBI BioProject Accession PRJNA277168
NCBI Locus Tag
VG12  
NCBI BioSample Accession SAMN03379015
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center National Institute of Advanced Industrial Science and Technology, AIST
Collaborating Institute
  
Funding Agency
  
Project Description
Hybrid de novo genome assembly using MiSeq and SOLiD short read data  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX904503  (Link to NCBI )
Experiment Title Paired-end short read data of Aspergillus oryzae RIB40 sequenced by MiSeq system
SRA Submission ID 1298701
Submitter Tsutomu Ikegami ([email protected])
Exp Library Strategy WGA
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument Illumina MiSeq
Spot Length 500
 
SRA Experiment Id SRX897080  (Link to NCBI )
Experiment Title Mate-paired short read data of Aspergillus oryzae RIB40 sequenced by SOLiD system
SRA Submission ID 1291114
Submitter Tsutomu Ikegami ([email protected])
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument AB 5500xl Genetic Analyzer
Spot Length 100
PROJECT COMPOSITION
Study Streptomyces avermitilis MA-4680 Genome
Organism Aspergillus oryzae RIB40
Analysis Projects Aspergillus oryzae RIB40
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) SOLiD
Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0038491
Organism Name
Aspergillus oryzae RIB40  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Aspergillus  
Genus Synonyms
  
Species
Aspergillus oryzae  
Subspecies
  
Species Synonyms
  
Strain
RIB40  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 510516
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Eurotiomycetes  
NCBI Order
Eurotiales  
NCBI Family
Aspergillaceae  
NCBI Genus
Aspergillus  
NCBI Species
Aspergillus oryzae  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 491981
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Filament-shaped  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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