PROJECT INFORMATION
GOLD Project ID
Gp0144029  
Project Name
Cystobasidium pallidum JCM 3780  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Cystobasidium pallidum
NCBI BioProject ID 313836
NCBI BioProject Accession PRJDB3673
NCBI Locus Tag
JCM3780  
NCBI BioSample Accession SAMD00028393
PI
Added By JGI automated process on 2016-05-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center RIKEN (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome sequencing of Cystobasidium pallidum JCM 3780  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id DRX029349  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing of SAMD00028393
SRA Submission ID 2314541
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument Illumina HiSeq 2500
Spot Length 302
 
SRA Experiment Id DRX033268  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing of SAMD00028393
SRA Submission ID 2314719
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument Illumina HiSeq 2500
Spot Length 302
PROJECT COMPOSITION
Study Genome sequencing of important eukaryotic microorganisms - RIKEN Center for Life Science Technologies
Organism Cystobasidium pallidum JCM 3780
Analysis Projects Cystobasidium pallidum JCM 3780
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0138972
Organism Name
Cystobasidium pallidum JCM 3780  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Cystobasidium  
Genus Synonyms
  
Species
Cystobasidium pallidum  
Subspecies
  
Species Synonyms
  
Strain
JCM 3780  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
JCM 3780  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 106015
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Cystobasidiomycetes  
NCBI Order
Cystobasidiales  
NCBI Family
Cystobasidiaceae  
NCBI Genus
Cystobasidium  
NCBI Species
Cystobasidium pallidum  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?