JGI GOLD | Project

PROJECT INFORMATION
GOLD Project ID	Gp0143950
Project Name	Candidatus Nitrospira inopinata ENR4
Other Names
Legacy GOLD ID
NCBI BioProject Name	Nitrospira inopinata (Comammox)
NCBI BioProject Accession	PRJEB10818
NCBI Locus Tag	NITINOP
NCBI BioSample Accession	SAMEA3560316
Source Sample ID
PI	Unknown
Added By	JGI automated process on 2016-05-18
Last Modified By	Supratim Mukherjee on 2016-05-18
Project Comments
Project Status	Complete and Published
Project Relevance
Sequencing Center	Department of Microbiology and Ecosystem Science, University of Vienna (Austria)
Collaborating Institute
Funding Agency
Project Description	Nitrospira inopinata is the first cultured complete ammonia oxidizer (comammox) organism. This chemolithoautotrophic bacterium grows by oxidizing ammonia to nitrate, and thus it unifies both steps of the nitrification process in one organism.
Is JGI Project	No
Project Information Visibility	Public
PROJECT TYPE
Specimen	Organism
Nucleic Acid	DNA
Sequencing Strategy	Whole Genome Sequencing
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
JGI Award DOI
Genome Publications	Nature: 528(7583):504-9 Complete nitrification by Nitrospira bacteria. PubMed: 26610024 DOI: 10.1038/nature16461
Other Publications
Ignored Publications
Unassigned Publications
SRA Experiment
PROJECT COMPOSITION
Study	Comammox genome sequencing project
Organism	Candidatus Nitrospira inopinata ENR4
Analysis Projects	Candidatus Nitrospira inopinata ENR4
Number of Analysis Projects (AP)	1
Number of Derived Analyis Projects (DAP)	0

SEQUENCING INFORMATION
Sequencing Status	Complete
Sequencing Quality (MIGS-31)	Level 6: Finished
Finishing Goal
Contamination Screening Input
DNA Amplification Method
Single Cell Lysis Protocol
Single Cell Lysis Approach
Sequencing Comments
DNA Amplification Kit
Sequencing Technology (MIGS-29)
Library Method (MIGS-28)
Library Layout
Library Screening Method
Number Of Reads
Read Size
Vector
GC Percent
Chromosome Count
Plasmid Count

ORGANISM NAME
GOLD Organism ID	Go0138893
Organism Name	Candidatus Nitrospira inopinata ENR4
Other names (alias, synonyms, short names, common names)
Organism Domain	BACTERIAL
Phylogeny	NITROSPIROTA
Genus	Nitrospira
Genus Synonyms
Species	Candidatus Nitrospira inopinata
Subspecies
Species Synonyms
Strain	ENR4
Strain Synonyms
Serovar/Cultivar
Culture Collection ID
Type Strain
Exemplar DOI
Exemplar Name
Taxon DOI
Biosafety Level
Organism Comments
Cultured	Yes
Culture Type	Isolate
Organism Type	Natural
Uncultured Type
Commercial Strain
Commercial Strain Comments
ORGANISM TAXONOMY
NCBI Taxonomy ID	1715989
NCBI Superkingdom	Bacteria
NCBI Kingdom
NCBI Phylum	Nitrospirota
NCBI Class	Nitrospiria
NCBI Order	Nitrospirales
NCBI Family	Nitrospiraceae
NCBI Genus	Nitrospira
NCBI Species	Candidatus Nitrospira inopinata
ISOLATION CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID

GENERAL PROPERTIES
Oxygen Requirement
Cell Shape
Motility
Sporulation
Temperature Range
Salinity
pH
Cell Diameter
Cell Length
Color
Gram Staining
Biotic Relationships
Symbiotic Physical Interaction
Symbiotic Relationship
Symbiont Name
Symbiont Taxon ID
Cell Arrangements
Diseases
Known Habitats
Metabolisms
Phenotypes
Energy Sources

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