Studies
|
56,335 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0143869
|
|
Project Name
|
Chlorobium limicola Frasassi
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Chlorobium limicola strain:Frasassi |
|
NCBI BioProject Accession
|
PRJNA300282 |
|
NCBI Locus Tag
|
ASB62
|
|
NCBI BioSample Accession
|
SAMN04217978 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2016-05-18 |
| Last Modified By | Hema Katta on 2017-12-01 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Environmental |
|
Sequencing Center
|
Pennsylvania State University
(USA)
|
|
Collaborating Institute
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Funding Agency
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Project Description
|
This project aims to sequence the dominant green sulfur bacteria population in mats formed in artificial aquarium in the Frasassi cave system. This study showed that light-utilizing taxa can thrive in a previously dark ecosystem that have been tampered by human activities.
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Genome announcements: Draft Genome Sequence of Lampenflora Chlorobium limicola Strain Frasassi in a Sulfidic Cave System. PubMed: 27174272 DOI: 10.1128/genomeA.00357-16 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Chlorobium limicola Frasassi Genome sequencing |
| Organism |
Chlorobium limicola Frasassi |
| Analysis Projects |
Chlorobium limicola Frasassi |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
|
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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|
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
|
Illumina HiSeq |
|
Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0138814 |
| Organism Name |
Chlorobium limicola Frasassi
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
CHLOROBIOTA
|
| Genus |
Chlorobium
|
| Genus Synonyms |
|
| Species |
Chlorobium limicola
|
| Subspecies |
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| Species Synonyms |
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| Strain |
Frasassi
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
|
| Cultured |
Yes
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| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1092 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Chlorobiota
|
| NCBI Class |
Chlorobiia
|
| NCBI Order |
Chlorobiales
|
| NCBI Family |
Chlorobiaceae
|
| NCBI Genus |
Chlorobium
|
| NCBI Species |
Chlorobium limicola
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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