Studies
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49,605 |
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Biosamples
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132,895 |
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Sequencing Projects
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410,410 |
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Analysis Projects
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321,254 |
| Organisms | 410,919 |
| PROJECT INFORMATION | |||||||||||||||||||||
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GOLD Project ID
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Gp0143220
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Project Name
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Jannaschia rubra CECT 5088
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Jannaschia rubra CECT 5088 | ||||||||||||||||||||
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NCBI BioProject ID
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296995 |
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NCBI BioProject Accession
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PRJEB9955 |
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NCBI Locus Tag
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JAN5088
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NCBI BioSample Accession
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SAMEA3489929 |
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| PI | |||||||||||||||||||||
| Added By |
JGI automated process
on 2016-05-18 |
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| Last Modified By |
Supratim Mukherjee
on 2017-03-29 |
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| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Spanish Type Culture Collection (CECT)
(Spain)
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Collaborating Institute
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Funding Agency
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Project Description
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Jannaschia rubra is a member of the family Rhodobacteraceae described in 2005 by Macin et al. Genome sequencing of Jannaschia rubra CECT 5088 was done using the Illumina Miseq system by the Central Service of Support to Experimental Research (SCSIE) of the University of Valencia (Spain).
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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Project Information
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Database
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Genome Publications
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Other Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||||
| Study |
Whole genome sequencing of Jannaschia rubra CECT 5088, type strain |
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| Organism |
Jannaschia rubra CECT 5088 |
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| Analysis Projects |
Jannaschia rubra CECT 5088 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0138182 |
| Organism Name |
Jannaschia rubra CECT 5088
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-ALPHA
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| Genus |
Jannaschia
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| Genus Synonyms |
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| Species |
Jannaschia rubra
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| Subspecies |
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| Species Synonyms |
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| Strain |
CECT 5088
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
CECT 5088
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.9354
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| Exemplar Name |
Jannaschia rubra
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| Taxon DOI |
10.1601/tx.9354
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
282197 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Proteobacteria
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| NCBI Class |
Alphaproteobacteria
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| NCBI Order |
Rhodobacterales
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| NCBI Family |
Rhodobacteraceae
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| NCBI Genus |
Jannaschia
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| NCBI Species |
Jannaschia rubra
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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