PROJECT INFORMATION
GOLD Project ID
Gp0141915  
Project Name
Paraphoma chrysanthemicola PD 92/468 Standard Draft  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Paraphoma chrysanthemicola PD 92/468 Standard Draft
NCBI BioProject ID 347193
NCBI BioProject Accession PRJNA347193
NCBI Locus Tag
BKA63  
NCBI BioSample Accession SAMN05877947
PI Francis M. MARTIN
Added By JGI automated process on 2016-05-11
Last Modified By JGI automated process on 2019-08-13
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Deep Sequencing of Ecologically-relevant Dikarya species as an extension of the 1000 Fungal genomes project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX3538872
Experiment Title Paraphoma chrysanthemicola PD 92/468 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BOYYC
Library Layout SINGLE
 
SRA Experiment Id SRX3538873
Experiment Title Paraphoma chrysanthemicola PD 92/468 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BOYYC
Library Layout SINGLE
PROJECT COMPOSITION
Study Sequencing of Dikarya fungi: 1000 Fungal Genomes project extension
Organism Paraphoma chrysanthemicola PD 92/468
Analysis Projects Paraphoma chrysanthemicola PD 92/468 Standard Draft
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
PacBio Sequel
PacBio RS II
Library Method (MIGS-28)
PacBio >10kb w/ AMPure Bead Size Selection, Tubes  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0136935
Organism Name
Paraphoma chrysanthemicola PD 92/468  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-ASCOMYCOTA  
Genus
Paraphoma  
Genus Synonyms
  
Species
Paraphoma chrysanthemicola  
Subspecies
  
Species Synonyms
  
Strain
PD 92/468  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 798071
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Ascomycota  
NCBI Class
Dothideomycetes  
NCBI Order
Pleosporales  
NCBI Family
Phaeosphaeriaceae  
NCBI Genus
Paraphoma  
NCBI Species
Paraphoma chrysanthemicola  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizosphere  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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