PROJECT INFORMATION
GOLD Project ID
Gp0139262  
Project Name
Methylocapsa palsarum NE2  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Methylocapsa palsarum NE2
NCBI BioProject ID 335128
NCBI BioProject Accession PRJNA335128
NCBI Locus Tag
BD756  
NCBI BioSample Accession SAMN05444581
PI William Whitman
Added By JGI automated process on 2016-04-18
Last Modified By JGI automated process on 2020-04-13
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Sequencing as part of the Genomic Encyclopedia of Type Strains, Phase III project  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Genome announcements Draft Genome Sequence of NE2, an Obligate Methanotroph from Subarctic Soil.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2157443  (Link to NCBI )
Experiment Title Methylocapsa palsarum NE2
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AZHBG
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the genomes of soil and plant-associated and newly described type strains
Organism Methylocapsa palsarum NE2
Analysis Projects Methylocapsa palsarum NE2
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0126614
Organism Name
Methylocapsa palsarum NE2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Methylocapsa  
Genus Synonyms
  
Species
Methylocapsa sp. NE2  
Subspecies
  
Species Synonyms
  
Strain
NE2  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
LMG 28715  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.27495  
Exemplar Name
Methylocapsa palsarum  
Taxon DOI
10.1601/tx.27495  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1612308
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Beijerinckiaceae  
NCBI Genus
Methylocapsa  
NCBI Species
Methylocapsa palsarum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources Methanotroph

 

 

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